RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 GGHQ92820 318 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 BPESC1Q9GZL8 116 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 CST9LQ9H4G1 147 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 RAB22AQ9UL26 194 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 IGKV3D-15A0A087WSY6 115 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF727A8MUV8 499 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 PRSS23O95084 383 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 CDS2O95674 445 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 PRH1P02810 166 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 TFF1P04155 84 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 IFI6P09912 130 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 FPR2P25090 351 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 FXYD6P3P58550 94 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 EIF2B1Q14232 305 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 ZSCAN4Q8NAM6 433 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 BEND2Q8NDZ0 799 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 OR2T33Q8NG76 320 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 FAM168AQ92567 244 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 SDSLQ96GA7 329 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 POM121L2Q96KW2 1035 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 FBXO7Q9Y3I1 522 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 C5orf63A6NC05 138 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 LANCL1O43813 399 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 OR2F2O95006 317 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 OR8U9P0C7N5 309 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 PSG1P11464 419 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 ADIPOQQ15848 244 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 CEACAM21Q3KPI0 293 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 FBLN7Q53RD9 439 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 EIF5AL1Q6IS14 154 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 LCN8Q6JVE9 175 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 HACD2Q6Y1H2 254 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 DUSP18Q8NEJ0 188 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 OR51D1Q8NGF3 324 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 SYNPRQ8TBG9 265 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 TAF15Q92804 592 aaKnown RBP eCLIP6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 TAS2R8Q9NYW2 309 aa6.72□□□□□ -1.33
LIMCH1-219ENST00000514096 GGT3PA6NGU5 568 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 F5H5P2 479 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 RNASEK-C17orf49H0YIS7 233 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 FAAHO00519 579 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 H2AFB1P0C5Y9 115 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 ADCYAP1P18509 176 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 APOBEC3AP31941 199 aaPredicted RBP6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 EIF5AP63241 154 aaKnown RBP6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF573Q86YE8 665 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 GID4Q8IVV7 300 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 RFLNBQ8N5W9 214 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 ASB17Q8WXJ9 295 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 CMBLQ96DG6 245 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 AP1S3Q96PC3 154 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 TBX15Q96SF7 602 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 PPP1R3EQ9H7J1 279 aa6.71□□□□□ -1.33
LIMCH1-219ENST00000514096 OR5H14A6NHG9 310 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 RCC1P18754 421 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 COL8A2P25067 703 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 PSMB10P40306 273 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 UBA52P62987 128 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 GUSBP1Q15486 140 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 SPHARQ15513 63 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 HAGHQ16775 308 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 IQCJQ1A5X6 159 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 PRSS45Q7RTY3 260 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 SPICQ8N5J4 248 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 ZBTB34Q8NCN2 500 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 KCTD12Q96CX2 325 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 SEH1LQ96EE3 360 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 ALG12Q9BV10 488 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 LPAR5Q9H1C0 372 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 CLN6Q9NWW5 311 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF586Q9NXT0 402 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 B9D1Q9UPM9 204 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 AMDHD2Q9Y303 409 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 C13orf42A0A1B0GVH6 325 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 PHF1O43189 567 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 CA6P23280 308 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 ARR3P36575 388 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 PLP1P60201 277 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 UBE2V2Q15819 145 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 SPRNQ5BIV9 151 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 LAIR2Q6ISS4 152 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF584Q8IVC4 421 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 SLC35E1Q96K37 410 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 CITED2Q99967 270 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 TIMM10BQ9Y5J6 103 aa6.71□□□□□ -1.34
LIMCH1-219ENST00000514096 DOCK11Q5JSL3 2073 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 MEIS3P1A6NDR6 274 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 DNPH1O43598 174 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 LILRA1O75019 489 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TSPAN15O95858 294 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 CD8AP01732 235 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 IGHV2-5P01817 119 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 ADRA2CP18825 462 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 COX5AP20674 150 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 SULT1A1P50225 295 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 PPP1CBP62140 327 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 UBE2V1Q13404 147 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 TAF9Q16594 264 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 FBXL19-AS1Q494R0 122 aa6.7□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF343Q6P1L6 599 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms