RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 BET1LQ9NYM9 111 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 DOPEY2Q9Y3R5 2298 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 A6NNC1 897 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 H3BP45 60 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 BPNT1O95861 308 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MMP16P51512 607 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ERVFC1-1P60608 527 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CNN3Q15417 329 aaKnown RBP9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TMEM241Q24JQ0 296 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PIGYQ3MUY2 71 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FDCSPQ8NFU4 85 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR51H1Q8NH63 302 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 VN1R17PQ8TDU5 208 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SLC26A1Q9H2B4 701 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SLC2A9Q9NRM0 540 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 B3GAT1Q9P2W7 334 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PRSS50Q9UI38 385 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NAGKQ9UJ70 344 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF732B4DXR9 585 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TIMM8AO60220 97 aaPredicted RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ONECUT2O95948 504 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SOD3P08294 240 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HEPN1Q6WQI6 88 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HIST3H2BBQ8N257 126 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR5C1Q8NGR4 320 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR2T10Q8NGZ9 312 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HINT2Q9BX68 163 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 BARX1Q9HBU1 254 aaPredicted RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF107Q9UII5 783 aaPredicted RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 A0A1B0GTI1 187 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CD59P13987 128 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZFP36L1Q07352 338 aaKnown RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MPV17LQ2QL34 196 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 C1QL2Q7Z5L3 287 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TMEM183AQ8IXX5 376 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MRPL24Q96A35 216 aaKnown RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MARS2Q96GW9 593 aaKnown RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SMDT1Q9H4I9 107 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF286AQ9HBT8 521 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CSPG4Q6UVK1 2322 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PTPN13Q12923 2485 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NCOA6Q14686 2063 aaPredicted RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HSPB2A8KAH6 182 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TOX4O94842 621 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NXPH2O95156 264 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NGFP01138 241 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 P2RY1P47900 373 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GGTLC2Q14390 218 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HSPB2Q16082 182 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 BSXQ3C1V8 233 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR2C3Q8N628 320 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CMTM2Q8TAZ6 248 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PSMF1Q92530 271 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ANGPTL4Q9BY76 406 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 IGLV3-12A0A075B6K2 115 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CD5P06127 495 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HKR1P10072 659 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GCH1P30793 250 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CHRNA7P36544 502 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SRPXP78539 464 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 JOSD1Q15040 202 aaPredicted RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MAJINQ3KP22 176 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 WDR25Q64LD2 544 aaPredicted RBP9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 BTNL8Q6UX41 500 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 BIVMQ86UB2 503 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZADH2Q8N4Q0 377 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF441Q8N8Z8 693 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZPBPQ9BS86 351 aa9.31□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FRYQ5TBA9 3013 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CD1AP06126 327 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 KITLGP21583 273 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 AADACP22760 399 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HBG1P69891 147 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HBG2P69892 147 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PSG4Q00888 419 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF90Q03938 601 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR5R1Q8NH85 324 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RPS4Y2Q8TD47 263 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 KCNE4Q8WWG9 221 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 WBP1Q96G27 269 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PARD6GQ9BYG4 376 aaPredicted RBP9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SERTAD4Q9NUC0 356 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NECAP2Q9NVZ3 263 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SLC2A8Q9NY64 477 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 KIAA1456Q9P272 454 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RPH3ALQ9UNE2 315 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPV4 95 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 B4E171 279 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 F8VVB4 439 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 F8VWA3 439 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CDX4O14627 284 aaPredicted RBP9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NPIPB7O75200 414 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 APOA2P02652 100 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SP1P08047 785 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TSPAN7P41732 249 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FGF8P55075 233 aaPredicted RBP9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RND3P61587 244 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RFESDQ8TAC1 157 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CYYR1Q96J86 154 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HIST1H2BLQ99880 126 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms