RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TANC2Q9HCD6 1990 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 SLC25A4P12235 298 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 RPA2P15927 270 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 C4BPBP20851 252 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 AP2S1P53680 142 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-202ENST00000339872 P2RX3P56373 397 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 GNMTQ14749 295 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 OPCMLQ14982 345 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 IAH1Q2TAA2 248 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-202ENST00000339872 ZNF672Q499Z4 452 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-202ENST00000339872 TEX36Q5VZQ5 186 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 TRAT1Q6PIZ9 186 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 LYZL2Q7Z4W2 148 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 FAM219AQ8IW50 185 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 MUC15Q8N387 334 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 LRTM2Q8N967 370 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 GALNT11Q8NCW6 608 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 BVESQ8NE79 360 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 OR8H1Q8NGG4 311 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 RFESDQ8TAC1 157 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 LHFPL5Q8TAF8 219 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 SDSLQ96GA7 329 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 GAFA1Q96PS6 74 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 CCL13Q99616 98 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 MFFQ9GZY8 342 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 TMEM222Q9H0R3 208 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 ZNF665Q9H7R5 613 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 HEXA-AS1Q9H8Q6 139 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 MBD2Q9UBB5 411 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 HIVEP3Q5T1R4 2406 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 ARFGEF3Q5TH69 2177 aa11.16□□□□□ -0.62
HMGB1-202ENST00000339872 SPINT2O43291 252 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 SNAPC5O75971 98 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 FAM53AQ6NSI3 398 aaPredicted RBP11.15□□□□□ -0.62
HMGB1-202ENST00000339872 C1orf87Q8N0U7 546 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 FAM216BQ8N7L0 139 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 CCL17Q92583 94 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 C18orf12Q96KH6 178 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 ARL6Q9H0F7 186 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 ANKHD1Q8IWZ3 2542 aaKnown RBP11.15□□□□□ -0.62
HMGB1-202ENST00000339872 SMG1Q96Q15 3661 aaKnown RBP11.15□□□□□ -0.62
HMGB1-202ENST00000339872 IGHV3-43A0A0B4J1X8 118 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 PGLYRP1O75594 196 aaPredicted RBP11.15□□□□□ -0.62
HMGB1-202ENST00000339872 CLDN14O95500 239 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 IGHV3-43DP0DP04 118 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 LOXP28300 417 aaPredicted RBP11.15□□□□□ -0.62
HMGB1-202ENST00000339872 S100A11P31949 105 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 PPP1CCP36873 323 aaKnown RBP11.15□□□□□ -0.62
HMGB1-202ENST00000339872 SRPXP78539 464 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 TMEM268Q5VZI3 342 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 ZNF788Q6ZQV5 615 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 TMUB2Q71RG4 321 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 OR5D13Q8NGL4 314 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 OR2S2Q9NQN1 319 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 TMEM106BQ9NUM4 274 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 TNFSF18Q9UNG2 199 aa11.15□□□□□ -0.62
HMGB1-202ENST00000339872 C15orf65H3BRN8 121 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 TMEM178BH3BS89 294 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 IGLV2-14P01704 120 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 S100A10P60903 97 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 RAB32Q13637 225 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 LTC4SQ16873 150 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 TMEM65Q6PI78 240 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 SLC35G3Q8N808 338 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 OR51H1Q8NH63 302 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 ITLN2Q8WWU7 325 aaPredicted RBP11.14□□□□□ -0.63
HMGB1-202ENST00000339872 ACACBO00763 2458 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 TRAV38-1A0A0B4J264 116 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 NKX6-3A6NJ46 265 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 H0Y980 276 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 LGALS8O00214 317 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 F2RP25116 425 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 SWI5Q1ZZU3 235 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 ZNF695Q8IW36 515 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 ZNF808Q8N4W9 903 aaPredicted RBP11.14□□□□□ -0.63
HMGB1-202ENST00000339872 DCUN1D4Q92564 292 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 TMEM204Q9BSN7 226 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 OR2D2Q9H210 308 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 DSCAML1Q8TD84 2053 aa11.14□□□□□ -0.63
HMGB1-202ENST00000339872 PPIAL4EA0A075B759 164 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 PPIAL4DF5H284 164 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 TMPRSS2O15393 492 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 ATP6V1G1O75348 118 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 PPIAL4FP0DN26 164 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 GZMHP20718 246 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 IL15RAQ13261 267 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 TEX261Q6UWH6 196 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 FOXRED2Q8IWF2 684 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 C14orf79Q96F83 325 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 AKR1E2Q96JD6 320 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 OR6C3Q9NZP0 311 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 PPIAL4AQ9Y536 164 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 U3KQ87 197 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 H0YIZ8 118 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 SIGLEC5O15389 551 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 UCP1P25874 307 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 HTD2P86397 168 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 ZNF767PQ75MW2 155 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 DRAM1Q8N682 238 aa11.13□□□□□ -0.63
HMGB1-202ENST00000339872 TMEM56Q96MV1 263 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms