RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 SERINC4A6NH21 518 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 ZFP92A6NM28 416 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 XRCC2O43543 280 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 LYPD3O95274 346 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 DBIP07108 87 aaKnown RBP8.84□□□□□ -0.99
VPS39-214ENST00000614932 NGFRP08138 427 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 OR10J4P0C629 311 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 GRK6P43250 576 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 CEBPDP49716 269 aaPredicted RBP8.84□□□□□ -0.99
VPS39-214ENST00000614932 CLDN15P56746 228 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 EIPR1Q53HC9 387 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 FFAR4Q5NUL3 377 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 PET117Q6UWS5 81 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 SHISA6Q6ZSJ9 500 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 MRPL21Q7Z2W9 205 aaKnown RBP8.84□□□□□ -0.99
VPS39-214ENST00000614932 PRR22Q8IZ63 422 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 OR4C3Q8NH37 302 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 FAM46BQ96A09 425 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 MRPL24Q96A35 216 aaKnown RBP8.84□□□□□ -0.99
VPS39-214ENST00000614932 RASD2Q96D21 266 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 VDAC3Q9Y277 283 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 KLHDC2Q9Y2U9 406 aa8.84□□□□□ -0.99
VPS39-214ENST00000614932 NPIPB7O75200 414 aa8.83□□□□□ -1
VPS39-214ENST00000614932 CD38P28907 300 aa8.83□□□□□ -1
VPS39-214ENST00000614932 S100GP29377 79 aa8.83□□□□□ -1
VPS39-214ENST00000614932 BAXQ07812 192 aa8.83□□□□□ -1
VPS39-214ENST00000614932 MFGE8Q08431 387 aaPredicted RBP8.83□□□□□ -1
VPS39-214ENST00000614932 IL13RA2Q14627 380 aa8.83□□□□□ -1
VPS39-214ENST00000614932 ASPHD2Q6ICH7 369 aa8.83□□□□□ -1
VPS39-214ENST00000614932 C5orf17Q8NAS9 161 aa8.83□□□□□ -1
VPS39-214ENST00000614932 OR4P4Q8NGL7 312 aa8.83□□□□□ -1
VPS39-214ENST00000614932 DDIT4LQ96D03 193 aa8.83□□□□□ -1
VPS39-214ENST00000614932 SFRP2Q96HF1 295 aa8.83□□□□□ -1
VPS39-214ENST00000614932 UHRF2Q96PU4 802 aa8.83□□□□□ -1
VPS39-214ENST00000614932 NMNAT3Q96T66 252 aa8.83□□□□□ -1
VPS39-214ENST00000614932 SMIM7Q9BQ49 75 aa8.83□□□□□ -1
VPS39-214ENST00000614932 AGMATQ9BSE5 352 aa8.83□□□□□ -1
VPS39-214ENST00000614932 RSG1Q9BU20 258 aa8.83□□□□□ -1
VPS39-214ENST00000614932 PRTFDC1Q9NRG1 225 aa8.83□□□□□ -1
VPS39-214ENST00000614932 A0A1B0GWA3 101 aa8.83□□□□□ -1
VPS39-214ENST00000614932 DCDC2BA2VCK2 349 aa8.83□□□□□ -1
VPS39-214ENST00000614932 RAB29O14966 203 aa8.83□□□□□ -1
VPS39-214ENST00000614932 SERF1AO75920 110 aa8.83□□□□□ -1
VPS39-214ENST00000614932 CCNOP22674 350 aa8.83□□□□□ -1
VPS39-214ENST00000614932 RPL23P62829 140 aaKnown RBP8.83□□□□□ -1
VPS39-214ENST00000614932 EXT1Q16394 746 aa8.83□□□□□ -1
VPS39-214ENST00000614932 WBP2NLQ6ICG8 309 aa8.83□□□□□ -1
VPS39-214ENST00000614932 ZNF440Q8IYI8 595 aa8.83□□□□□ -1
VPS39-214ENST00000614932 FBXL14Q8N1E6 418 aa8.83□□□□□ -1
VPS39-214ENST00000614932 OR1B1Q8NGR6 318 aa8.83□□□□□ -1
VPS39-214ENST00000614932 EMG1Q92979 244 aaKnown RBP8.83□□□□□ -1
VPS39-214ENST00000614932 GNPNAT1Q96EK6 184 aaPredicted RBP8.83□□□□□ -1
VPS39-214ENST00000614932 SIGMAR1Q99720 223 aa8.83□□□□□ -1
VPS39-214ENST00000614932 PGPEP1Q9NXJ5 209 aa8.83□□□□□ -1
VPS39-214ENST00000614932 TP53TG3Q9ULZ0 132 aa8.83□□□□□ -1
VPS39-214ENST00000614932 OR51B2Q9Y5P1 312 aa8.83□□□□□ -1
VPS39-214ENST00000614932 CELSR3Q9NYQ7 3312 aa8.82□□□□□ -1
VPS39-214ENST00000614932 GRIFINA4D1Z8 144 aa8.82□□□□□ -1
VPS39-214ENST00000614932 J3QR06 171 aa8.82□□□□□ -1
VPS39-214ENST00000614932 IGLC1P0CG04 106 aa8.82□□□□□ -1
VPS39-214ENST00000614932 IL3RAP26951 378 aa8.82□□□□□ -1
VPS39-214ENST00000614932 GDF1P27539 372 aa8.82□□□□□ -1
VPS39-214ENST00000614932 PTGER4P35408 488 aa8.82□□□□□ -1
VPS39-214ENST00000614932 GPR6P46095 362 aaPredicted RBP8.82□□□□□ -1
VPS39-214ENST00000614932 ASCL1P50553 236 aa8.82□□□□□ -1
VPS39-214ENST00000614932 OR1D5P58170 312 aa8.82□□□□□ -1
VPS39-214ENST00000614932 LINC00310P59036 64 aa8.82□□□□□ -1
VPS39-214ENST00000614932 DMWDQ09019 674 aa8.82□□□□□ -1
VPS39-214ENST00000614932 SQSTM1Q13501 440 aa8.82□□□□□ -1
VPS39-214ENST00000614932 LHFPL1Q86WI0 220 aa8.82□□□□□ -1
VPS39-214ENST00000614932 SIGLECL1Q8N7X8 197 aa8.82□□□□□ -1
VPS39-214ENST00000614932 OR4F17Q8NGA8 305 aa8.82□□□□□ -1
VPS39-214ENST00000614932 OR6N2Q8NGY6 317 aa8.82□□□□□ -1
VPS39-214ENST00000614932 ASB5Q8WWX0 329 aa8.82□□□□□ -1
VPS39-214ENST00000614932 C4orf45Q96LM5 186 aa8.82□□□□□ -1
VPS39-214ENST00000614932 DGAT2Q96PD7 388 aa8.82□□□□□ -1
VPS39-214ENST00000614932 OR4F4Q96R69 305 aa8.82□□□□□ -1
VPS39-214ENST00000614932 PPP1R3CQ9UQK1 317 aa8.82□□□□□ -1
VPS39-214ENST00000614932 B3GALT5Q9Y2C3 310 aa8.82□□□□□ -1
VPS39-214ENST00000614932 TBL2Q9Y4P3 447 aaKnown RBP8.82□□□□□ -1
VPS39-214ENST00000614932 ZNF732B4DXR9 585 aa8.82□□□□□ -1
VPS39-214ENST00000614932 NDUFB2O95178 105 aa8.82□□□□□ -1
VPS39-214ENST00000614932 SLC35E2P0CK97 266 aa8.82□□□□□ -1
VPS39-214ENST00000614932 AADACP22760 399 aa8.82□□□□□ -1
VPS39-214ENST00000614932 SFTPDP35247 375 aa8.82□□□□□ -1
VPS39-214ENST00000614932 ADMP35318 185 aa8.82□□□□□ -1
VPS39-214ENST00000614932 PSG9Q00887 426 aa8.82□□□□□ -1
VPS39-214ENST00000614932 EWSR1Q01844 656 aaKnown RBP eCLIP8.82□□□□□ -1
VPS39-214ENST00000614932 SMAGPQ0VAQ4 97 aa8.82□□□□□ -1
VPS39-214ENST00000614932 FHL1Q13642 323 aa8.82□□□□□ -1
VPS39-214ENST00000614932 LINC01590Q5TEZ4 76 aa8.82□□□□□ -1
VPS39-214ENST00000614932 DPY19L4Q7Z388 723 aa8.82□□□□□ -1
VPS39-214ENST00000614932 ZIC4Q8N9L1 334 aa8.82□□□□□ -1
VPS39-214ENST00000614932 OR13G1Q8NGZ3 307 aa8.82□□□□□ -1
VPS39-214ENST00000614932 C16orf52Q8NHV5 167 aa8.82□□□□□ -1
VPS39-214ENST00000614932 LRP4O75096 1905 aa8.82□□□□□ -1
VPS39-214ENST00000614932 A0A0U1RQK1 487 aa8.81□□□□□ -1
VPS39-214ENST00000614932 MEGF11A6BM72 1044 aa8.81□□□□□ -1
VPS39-214ENST00000614932 SRFP11831 508 aa8.81□□□□□ -1
VPS39-214ENST00000614932 ALOX5APP20292 161 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms