RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CSTBP04080 98 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 NFYBP25208 207 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 C21orf33P30042 268 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 MNDAP41218 407 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 RBM11P57052 281 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 TAS2R43P59537 309 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 PAX5Q02548 391 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 ST3GAL4Q11206 333 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 RBM39Q14498 530 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 HABP2Q14520 560 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 C17orf58Q2M2W7 97 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 HLA-DRB5Q30154 266 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 Q499Y3 187 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 PDLIM3Q53GG5 364 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 NHLRC3Q5JS37 347 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 OGFRL1Q5TC84 451 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 RSBN1Q5VWQ0 802 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 DMKNQ6E0U4 476 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 CCDC144NLQ6NUI1 221 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 ASCL4Q6XD76 172 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 OSR2Q8N2R0 312 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 C11orf44Q8N8P7 122 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 OR10K1Q8NGX5 313 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 OR9G1Q8NH87 305 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 GGHQ92820 318 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 GHSRQ92847 366 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF184Q99676 751 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 DPCDQ9BVM2 203 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 VCXQ9H320 206 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 IFT22Q9H7X7 185 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF286AQ9HBT8 521 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 CALYQ9NYX4 217 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 CNOT2Q9NZN8 540 aaKnown RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 CLEC2DQ9UHP7 191 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 KIF25Q9UIL4 384 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 BLOC1S6Q9UL45 172 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 ING4Q9UNL4 249 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 ST3GAL6Q9Y274 331 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 AMMECR1Q9Y4X0 333 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 SIRT4Q9Y6E7 314 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 OOSP1A8MZH6 123 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 LY6LH3BQJ8 138 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 MYL12BO14950 172 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF780AO75290 641 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 GPX5O75715 221 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 OR7C1O76099 320 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 LALBAP00709 142 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 IL1AP01583 271 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 OPN1MWP04001 364 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 GNAO1P09471 354 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 OPN1MW2P0DN77 364 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 OPN1MW3P0DN78 364 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 CGB3P0DN86 165 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 CGB7P0DN87 165 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 GTF2F2P13984 249 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 IGFBP3P17936 291 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 SERPINA2P20848 420 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 VDAC2P45880 294 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 BLCAPP62952 87 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 GPR176Q14439 515 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 MPV17LQ2QL34 196 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 TPTE2P1Q5T6R2 138 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 SLC16A12Q6ZSM3 486 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 NDUFA11Q86Y39 141 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 STX19Q8N4C7 294 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 ZFP41Q8N8Y5 198 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 SUMF2Q8NBJ7 301 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF485Q8NCK3 441 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 OR10A7Q8NGE5 316 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 OR13A1Q8NGR1 328 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 OR13C5Q8NGS8 318 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 PLPPR1Q8TBJ4 325 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 MRGPRDQ8TDS7 321 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 THRSPQ92748 146 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 TOMM40LQ969M1 308 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 RPEQ96AT9 228 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 PGLYRP3Q96LB9 341 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 RBM14Q96PK6 669 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 MMP28Q9H239 520 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 LINC00574Q9H8X3 128 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 IDI2-AS1Q9NZ38 188 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 PSORS1C1Q9UIG5 152 aa5.43□□□□□ -1.54
CCDC88A-213ENST00000476903 NOTCH1P46531 2555 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 TRAV8-7A0A075B6U6 113 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 TRBV5-7A0A0A0MS05 114 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 PNMA8CA0A1B0GUJ8 204 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 TMEM30CPA0ZSE6 113 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 MAGEA13PA6NCF6 341 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 NPIPB11E5RHQ5 1161 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 J3QR06 171 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 M0QZK8 103 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 GEMIN2O14893 280 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 XPNPEP2O43895 674 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 B3GALNT1O75752 331 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 OR2F2O95006 317 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 CD1AP06126 327 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM106CPP0CH98 169 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 CD28P10747 220 aa5.42□□□□□ -1.54
CCDC88A-213ENST00000476903 GZMHP20718 246 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms