RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 SGCZQ96LD1 299 aa16.94■□□□□ 0.3
CRLF3-201ENST00000324238 C1QTNF5Q9BXJ0 243 aa16.94■□□□□ 0.3
CRLF3-201ENST00000324238 RPRMQ9NS64 109 aa16.94■□□□□ 0.3
CRLF3-201ENST00000324238 MMP9P14780 707 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 ELLP55199 621 aaPredicted RBP16.93■□□□□ 0.3
CRLF3-201ENST00000324238 PCBD1P61457 104 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 KRTAP27-1Q3LI81 207 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 BEND4Q6ZU67 534 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 CCDC54Q8NEL0 328 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 SPIN2AQ99865 258 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 SPIN2BQ9BPZ2 258 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 NIPSNAP3BQ9BS92 247 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 KIAA1456Q9P272 454 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 RBM7Q9Y580 266 aaKnown RBP16.93■□□□□ 0.3
CRLF3-201ENST00000324238 ZNF880Q6PDB4 577 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 C12orf49Q9H741 205 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 TINAGQ9UJW2 476 aa16.93■□□□□ 0.3
CRLF3-201ENST00000324238 IGHV2-70P01814 119 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 SERPINE2P07093 398 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 RAB2AP61019 212 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 OR2B11Q5JQS5 317 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 PCSK4Q6UW60 755 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 ZDHHC23Q8IYP9 409 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 CACNG5Q9UF02 275 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 RNF115Q9Y4L5 304 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 UCP1P25874 307 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 FGF12P61328 243 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 RAB1AP62820 205 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 REPIN1Q9BWE0 567 aaKnown RBP16.92■□□□□ 0.3
CRLF3-201ENST00000324238 PLSCR2Q9NRY7 297 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BKO60814 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BJP06899 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BOP23527 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BBP33778 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 MAGEA5P43359 124 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BDP58876 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BCP62807 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST2H2BEQ16778 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.92■□□□□ 0.3
CRLF3-201ENST00000324238 ABLIM2Q6H8Q1 611 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 MKXQ8IYA7 352 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BHQ93079 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BNQ99877 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 HIST1H2BMQ99879 126 aa16.92■□□□□ 0.3
CRLF3-201ENST00000324238 SLC34A2O95436 690 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 SOD3P08294 240 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 OR2T2Q6IF00 324 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 ZNF383Q8NA42 475 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 PSMF1Q92530 271 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 KCNS2Q9ULS6 477 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 SPTBN2O15020 2390 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 CA6P23280 308 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 F2RP25116 425 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 S100PP25815 95 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 SRPXP78539 464 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 MRPL30Q8TCC3 161 aaKnown RBP16.91■□□□□ 0.3
CRLF3-201ENST00000324238 TVP23CQ96ET8 276 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 RHOVQ96L33 236 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 ATP5SQ99766 215 aa16.91■□□□□ 0.3
CRLF3-201ENST00000324238 TRAV24A0A0B4J272 114 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 WDR1O75083 606 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 TECTAO75443 2155 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 HOXA5P20719 270 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 PMELP40967 661 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 ZNF610Q8N9Z0 462 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 NECAP1Q8NC96 275 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 KCNE4Q8WWG9 221 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 RNF150Q9ULK6 438 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 CACNA1HO95180 2353 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 SIRPB1O00241 398 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 IGKV1-39P01597 117 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 IGKV1D-39P04432 117 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 OR10J5Q8NHC4 309 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 MALSU1Q96EH3 234 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 ATP23Q9Y6H3 246 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 ICE1Q9Y2F5 2266 aa16.9■□□□□ 0.3
CRLF3-201ENST00000324238 CD200P41217 278 aa16.89■□□□□ 0.3
CRLF3-201ENST00000324238 TAS2R30P59541 319 aa16.89■□□□□ 0.3
CRLF3-201ENST00000324238 ZNF726P1Q15940 193 aa16.89■□□□□ 0.3
CRLF3-201ENST00000324238 SPANXN5Q5MJ07 72 aa16.89■□□□□ 0.3
CRLF3-201ENST00000324238 C6orf15Q6UXA7 325 aaPredicted RBP16.89■□□□□ 0.3
CRLF3-201ENST00000324238 STX12Q86Y82 276 aa16.89■□□□□ 0.3
CRLF3-201ENST00000324238 FOXJ2Q9P0K8 574 aa16.89■□□□□ 0.3
CRLF3-201ENST00000324238 CYTIPO60759 359 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 TUSC2O75896 110 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 TFF1P04155 84 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 DEFA4P12838 97 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 CEACAM21Q3KPI0 293 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 FAM185AQ8N0U4 392 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 SPSB4Q96A44 273 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 HIST1H2AAQ96QV6 131 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 PFDN5Q99471 154 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 PLK3Q9H4B4 646 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 ZMAT5Q9UDW3 170 aaKnown RBP16.89■□□□□ 0.29
CRLF3-201ENST00000324238 DMXL1Q9Y485 3027 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 CD300LBA8K4G0 201 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 CD55P08174 381 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 DUSP3P51452 185 aaPredicted RBP16.89■□□□□ 0.29
CRLF3-201ENST00000324238 OR8G2PQ6IF36 304 aa16.89■□□□□ 0.29
CRLF3-201ENST00000324238 FRZBQ92765 325 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms