RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 HIST2H3AQ71DI3 136 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 MOB3AQ96BX8 217 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SPTBN1Q01082 2364 aaKnown RBP11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 DTYMKP23919 212 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 GFRA1P56159 465 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 UBE2NP61088 152 aaKnown RBP11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 PDZD11Q5EBL8 140 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SPANXN5Q5MJ07 72 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 IL34Q6ZMJ4 242 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 APOBEC3DQ96AK3 386 aaPredicted RBP11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 PLEKHA2Q9HB19 425 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SH2D2AQ9NP31 389 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 TINAGQ9UJW2 476 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 ZDHHC8Q9ULC8 765 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SLC22A20A6NK97 555 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SOX15O60248 233 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 GPR137BO60478 399 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 ALDH3B1P43353 468 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 EDDM3AQ14507 147 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SOHLH1Q5JUK2 328 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 AKR1C8PQ5T2L2 129 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SLC16A13Q7RTY0 426 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 ADGRG7Q96K78 797 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SEC11CQ9BY50 192 aa11.7□□□□□ -0.54
PRPF40B-209ENST00000548825 SMG1Q96Q15 3661 aaKnown RBP11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 ARPC4-TTLL3A0A0A6YYG9 625 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 C7orf77A4D0Y5 90 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 RAB13P51153 203 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 DVL1P1P54792 670 aaPredicted RBP11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 LINC00205P59089 165 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 HERPUD1Q15011 391 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 RSG1Q9BU20 258 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 PRELID3BQ9Y3B1 194 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 KRASP01116 189 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 RPS10P46783 165 aaKnown RBP11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 CLDN18P56856 261 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 ZNF816Q0VGE8 651 aaPredicted RBP11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 ABLIM2Q6H8Q1 611 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 FAM58AQ8N1B3 248 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 TRIB1Q96RU8 372 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 CDH20Q9HBT6 801 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 TMEM100Q9NV29 134 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 GNG13Q9P2W3 67 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 ANAPC10Q9UM13 185 aa11.69□□□□□ -0.54
PRPF40B-209ENST00000548825 ZNF724A8MTY0 619 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 RPL36A-HNRNPH2H7BZ11 118 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 IGHEP01854 428 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 HFEQ30201 348 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 BTNL3Q6UXE8 466 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 SMIM8Q96KF7 97 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 MSL2Q9HCI7 577 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 CACNG5Q9UF02 275 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 HSF4Q9ULV5 492 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 COL6A6A6NMZ7 2263 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 WNT9BO14905 357 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 S100GP29377 79 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 ECI1P42126 302 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 FLI1Q01543 452 aaPredicted RBP11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 TMEM252Q8N6L7 170 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 OR10V1Q8NGI7 309 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 CEACAM18A8MTB9 384 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 H2AFB1P0C5Y9 115 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 IL15RAQ13261 267 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 OR8B8Q15620 311 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 ZNF674Q2M3X9 581 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 LILRB2Q8N423 598 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 TMEM171Q8WVE6 324 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 C10orf35Q96D05 121 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 SAT2Q96F10 170 aaPredicted RBP11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 USB1Q9BQ65 265 aaKnown RBP11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 DUSP13Q9UII6 198 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 ZNF318Q5VUA4 2279 aa11.68□□□□□ -0.54
PRPF40B-209ENST00000548825 IGKV1-6A0A0C4DH72 117 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 A0A0G2JRQ6 117 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 C1orf196B1AJZ1 125 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 NKX2-8O15522 239 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 NQO2P16083 231 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 MDKP21741 143 aaPredicted RBP11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 GABRA2P47869 451 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 CEACAM21Q3KPI0 293 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 RNFT1Q5M7Z0 435 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 RBMS3Q6XE24 437 aaKnown RBP11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 REPIN1Q9BWE0 567 aaKnown RBP11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 TMEM222Q9H0R3 208 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 TREM2Q9NZC2 230 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 NDRG3Q9UGV2 375 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 ANKRD11Q6UB99 2663 aaPredicted RBP11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 H0YL77 283 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 WNT5AP41221 380 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 P2RY1P47900 373 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 RIPPLY2Q5TAB7 128 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 SSX9Q7RTT3 188 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 DMBX1Q8NFW5 382 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 OR1J1Q8NGS3 322 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 C1QTNF5Q9BXJ0 243 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 SMCO4Q9NRQ5 59 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 GLRX2Q9NS18 164 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 TMED3Q9Y3Q3 217 aa11.67□□□□□ -0.54
PRPF40B-209ENST00000548825 TRDCB7Z8K6 153 aa11.66□□□□□ -0.54
PRPF40B-209ENST00000548825 TMEM50AO95807 157 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms