RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 NKX6-3A6NJ46 265 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 GOSR2O14653 212 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 TIMM8AO60220 97 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 HPXP02790 462 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 HLA-GP17693 338 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CRYGSP22914 178 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 DAP3P51398 398 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SRSF3P84103 164 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CLEC12BQ2HXU8 276 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SMIM21Q3B7S5 101 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC25A53Q5H9E4 307 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 KIAA2026Q5HYC2 2103 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 GPR157Q5UAW9 335 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 DPY19L4Q7Z388 723 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 TMEM144Q7Z5S9 345 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 TGIF2LYQ8IUE0 185 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 COMMD1Q8N668 190 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 WDR31Q8NA23 367 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 OR2AJ1Q8NGZ0 328 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 TMEM186Q96B77 213 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SFRP2Q96HF1 295 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 G6PC2Q9NQR9 355 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CYSLTR2Q9NS75 346 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 RNF150Q9ULK6 438 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CLEC18AA5D8T8 446 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 OR7C2O60412 319 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 RENP00797 406 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CHRM2P08172 466 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CD14P08571 375 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 OR5G3P0C626 314 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 RAP2AP10114 183 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 PMELP40967 661 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 RPS27AP62979 156 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 NAAAQ02083 359 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 PAX5Q02548 391 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 DEFB113Q30KQ7 82 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 MESTQ5EB52 335 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 FAM201AQ5SY85 155 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CST9LP1Q5W188 147 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CLEC18BQ6UXF7 455 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 ANGPTL5Q86XS5 388 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SAMD12Q8N8I0 201 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CLEC18CQ8NCF0 446 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF479Q96JC4 524 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SMIM3Q9BZL3 60 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 YAE1D1Q9NRH1 226 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF701Q9NV72 531 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SLCO1C1Q9NYB5 712 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 TAAR3PQ9P1P4 343 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF107Q9UII5 783 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC25A15Q9Y619 301 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 MGAM2Q2M2H8 2515 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 IGHV3OR16-10A0A075B7F0 116 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 C7orf77A4D0Y5 90 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF724A8MTY0 619 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 TLX2O43763 284 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 PDE6DO43924 150 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 MT-ATP6P00846 226 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 RPL24P83731 157 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF691Q5VV52 312 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 OR2W3Q7Z3T1 314 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 FAM169BQ8N8A8 192 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 NOXO1Q8NFA2 376 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 RGP1Q92546 391 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC5A7Q9GZV3 580 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 VCX2Q9H322 139 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC17A5Q9NRA2 495 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 CDH10Q9Y6N8 788 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 NSD1Q96L73 2696 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 SCG5P05408 212 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 SFTA3P0C7M3 94 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 GGT2P36268 569 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 HINT1P49773 126 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 SNU13P55769 128 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 HNF4GQ14541 408 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 RAB11BQ15907 218 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC36A2Q495M3 483 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 BRICD5Q6PL45 260 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 ARIH2OSQ8N7S6 290 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 TCEANCQ8N8B7 351 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 TMED6Q8WW62 240 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 KCTD7Q96MP8 289 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 DUX5Q96PT3 197 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 CIB3Q96Q77 187 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 TXNIPQ9H3M7 391 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 PLEKHF2Q9H8W4 249 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 OBP2BQ9NPH6 170 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 UQCC1Q9NVA1 299 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 RIIAD1A6NNX1 92 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 HS3ST1O14792 307 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 ASAH2BP0C7U1 165 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 CALCBP10092 127 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 PGGHGQ32M88 737 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 DCAF12L2Q5VW00 463 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 OR4A47Q6IF82 309 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 OR6V1Q8N148 313 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 OR2Z1Q8NG97 314 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNRF4Q8WWF5 429 aa6.75□□□□□ -1.33
LIMCH1-219ENST00000514096 NANOS1Q8WY41 292 aaKnown RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms