RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 C17orf98A8MV24 154 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 CTDSP2O14595 271 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 XRCC3O43542 346 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 RBP4P02753 201 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 CD3GP09693 182 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 RCC1P18754 421 aaPredicted RBP24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 ERVFRD-1P60508 538 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 MRPS15P82914 257 aaKnown RBP24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 PRB3Q04118 309 aaPredicted RBP24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 C1orf122Q6ZSJ8 110 aa24.29■■□□□ 1.48
LIMCH1-211ENST00000509638 FN1P02751 2386 aaKnown RBP24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 hCG_1809904A0A1W2PP81 198 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 A0A1W2PPE2 198 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 A0A1W2PR64 198 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 A0A1W2PRV1 198 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 FAM25AB3EWG3 89 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 FAM25CB3EWG5 89 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 FAM25GB3EWG6 89 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 GSTP1P09211 210 aaKnown RBP24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 ARFRP1Q13795 201 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 C17orf58Q2M2W7 97 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 ZNF260Q3ZCT1 412 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 PRAMEF5Q5TYX0 476 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 ZNF782Q6ZMW2 699 aaPredicted RBP24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 NXF2Q9GZY0 626 aaKnown RBP24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 MIXL1Q9H2W2 232 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 RIMS4Q9H426 269 aaPredicted RBP24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 BATF3Q9NR55 127 aa24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 MBNL3Q9NUK0 354 aaKnown RBP24.28■■□□□ 1.48
LIMCH1-211ENST00000509638 NAV3Q8IVL0 2385 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 TRAV40A0A0B4J280 105 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 KBTBD11-OT1A0A1B0GTJ5 212 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 INAFM1C9JVW0 142 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 HNF1AP20823 631 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 OMGP23515 440 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 C6orf183Q5T699 404 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 HACD4Q5VWC8 232 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 SETD6Q8TBK2 473 aa24.27■■□□□ 1.48
LIMCH1-211ENST00000509638 CGB3P0DN86 165 aa24.26■■□□□ 1.47
LIMCH1-211ENST00000509638 CGB7P0DN87 165 aa24.26■■□□□ 1.47
LIMCH1-211ENST00000509638 TAS2R20P59543 309 aa24.26■■□□□ 1.47
LIMCH1-211ENST00000509638 MOB1BQ7L9L4 216 aa24.26■■□□□ 1.47
LIMCH1-211ENST00000509638 NUDCD2Q8WVJ2 157 aa24.26■■□□□ 1.47
LIMCH1-211ENST00000509638 C12orf77C9JDV5 145 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 MMP23AO75900 390 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 IGHV1-8P0DP01 117 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 PRTN3P24158 256 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 HEPN1Q6WQI6 88 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 UBALD1Q8TB05 177 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 AUNIPQ9H7T9 357 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 UNKLQ9H9P5 680 aaKnown RBP24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 TRBV6-6A0A0A6YYG2 114 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 HOXB4P17483 251 aaPredicted RBP24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 GZMHP20718 246 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 GNG2P59768 71 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 KLRD1Q13241 179 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 MADCAM1Q13477 382 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 TRAT1Q6PIZ9 186 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 LHX4Q969G2 390 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 EXTL2Q9UBQ6 330 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 ADAM30Q9UKF2 790 aa24.25■■□□□ 1.47
LIMCH1-211ENST00000509638 C15orf65H3BRN8 121 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 FCGR3AP08637 254 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 MNDAP41218 407 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 PNLIPRP3Q17RR3 467 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 ZNF880Q6PDB4 577 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 PDZD9Q8IXQ8 264 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 PRR18Q8N4B5 295 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 RFESDQ8TAC1 157 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 TNFRSF14Q92956 283 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 ARL11Q969Q4 196 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 LINC00574Q9H8X3 128 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 TAF9BQ9HBM6 251 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 SESN1Q9Y6P5 492 aa24.24■■□□□ 1.47
LIMCH1-211ENST00000509638 NIPBLQ6KC79 2804 aaeCLIP24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 ORC5O43913 435 aa24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 FSHBP01225 129 aa24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 PTHLHP12272 177 aa24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 TALDO1P37837 337 aa24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 GDNFP39905 211 aa24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 KLF17Q5JT82 389 aaPredicted RBP24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 NCR3LG1Q68D85 454 aa24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 TEX29Q8N6K0 151 aa24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 KCNIP1Q9NZI2 227 aa24.23■■□□□ 1.47
LIMCH1-211ENST00000509638 IGHV3OR16-10A0A075B7F0 116 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 RNASEK-C17orf49H0YIS7 233 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 IGHV4-38-2P0DP08 117 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 LTC4SQ16873 150 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 CNIH2Q6PI25 160 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 NANPQ8TBE9 248 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 KIRREL1Q96J84 757 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 MMP27Q9H306 513 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 CDC42EP3Q9UKI2 254 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 A3GALT2U3KPV4 340 aa24.22■■□□□ 1.47
LIMCH1-211ENST00000509638 NPIPB11E5RHQ5 1161 aa24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 COX7A1P24310 79 aa24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 PITPNAQ00169 270 aa24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 GPR157Q5UAW9 335 aa24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 BAIAP2L2Q6UXY1 529 aa24.21■■□□□ 1.47
LIMCH1-211ENST00000509638 ZNF554Q86TJ5 538 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms