RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CDK2P24941 298 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 SOX2P48431 317 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 RAB13P51153 203 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 DEFA6Q01524 100 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 BDH1Q02338 343 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 SLC34A1Q06495 639 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 IL13RA2Q14627 380 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 ATXN7L3Q14CW9 347 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 RSU1Q15404 277 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 LRRC36Q1X8D7 754 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 TM4SF20Q53R12 229 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 TMEM177Q53S58 311 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 PAN3Q58A45 887 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 LDLRAD2Q5SZI1 272 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 OR2G6Q5TZ20 316 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 XAF1Q6GPH4 301 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 TMEM219Q86XT9 240 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 Q8N2B8 174 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 DHRSXQ8N5I4 330 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 KLHDC1Q8N7A1 406 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 OR4D6Q8NGJ1 314 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 OR51A2Q8NGJ7 313 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 OR4P4Q8NGL7 312 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 TNFAIP8L1Q8WVP5 186 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 RGP1Q92546 391 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 TRIM63Q969Q1 353 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 TMEM106AQ96A25 262 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 CREB3L1Q96BA8 519 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 SMIM19Q96E16 107 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 COQ2Q96H96 371 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 TMEM80Q96HE8 168 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 NR1H4Q96RI1 486 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 PRSS22Q9GZN4 317 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF702PQ9H963 129 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 TMEM138Q9NPI0 162 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 BABAM2Q9NXR7 383 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 ING3Q9NXR8 418 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 DIMT1Q9UNQ2 313 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 FOXJ3Q9UPW0 622 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 CMYA5Q8N3K9 4069 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 MEGF8Q7Z7M0 2845 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 KBTBD11-OT1A0A1B0GTJ5 212 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM172BPA6NC97 362 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM90A22PA8MWA6 464 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 LEUTXA8MZ59 168 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 H0YHG0 523 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 HSPB6O14558 160 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 TOR1AO14656 332 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 OGG1O15527 345 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 KCNAB3O43448 404 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 CD34P28906 385 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 BDKRB2P30411 391 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 BRS3P32247 399 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF93P35789 620 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 CAPGP40121 348 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 CEACAM3P40198 252 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 GLP1RP43220 463 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 OR3A4PP47883 348 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 KCNJ3P48549 501 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 PRRX1P54821 245 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 ADARB1P78563 741 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 RIPK1Q13546 671 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 RCN1Q15293 331 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 PIGYQ3MUY2 71 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 YIF1BQ5BJH7 314 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 DDI2Q5TDH0 399 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 BAIAP2L2Q6UXY1 529 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 C16orf82Q7Z2V1 217 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 LINC00596Q86U02 117 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 C8orf59Q8N0T1 100 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF565Q8N9K5 539 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 Q8NFD4 153 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 OR51T1Q8NGJ9 327 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 OR52N1Q8NH53 320 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 FAM110DQ8TAY7 271 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 CAPSLQ8WWF8 208 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 AKR1E2Q96JD6 320 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 S100A13Q99584 98 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 BARHL1Q9BZE3 327 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 METTL9Q9H1A3 318 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 PPIL3Q9H2H8 161 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 NCOR1P1Q9H4R4 102 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 PCDHB16Q9NRJ7 776 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 SERTAD4Q9NUC0 356 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 PAK1IP1Q9NWT1 392 aaPredicted RBP5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 IL36GQ9NZH8 169 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 DPM3Q9P2X0 92 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 CKLFQ9UBR5 152 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 COX11Q9Y6N1 276 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 HSPE1-MOB4S4R3N1 261 aa5.45□□□□□ -1.54
CCDC88A-213ENST00000476903 MEIKINA0A087WXM9 373 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 A0A087X0M5 115 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 TRAV24A0A0B4J272 114 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 TRBV5-5A0A0J9YX44 114 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 A0A1B0GX30 115 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 EFCAB10A6NFE3 127 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 BUB1B-PAK6H3BSN5 160 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 BOLA2-SMG1P6H3BVE0 249 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 CDRT1O95170 752 aa5.44□□□□□ -1.54
CCDC88A-213ENST00000476903 IGLV1-47P01700 117 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms