RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CELSR2Q9HCU4 2923 aa15.48■□□□□ 0.07
CLN3-206ENST00000360019 ASH1LQ9NR48 2969 aaKnown RBP15.48■□□□□ 0.07
CLN3-206ENST00000360019 CSMD2Q7Z408 3487 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 NKX6-3A6NJ46 265 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 FCN3O75636 299 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 DHFRP00374 187 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 NPY4RP50391 375 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 SEC61A1P61619 476 aaKnown RBP15.47■□□□□ 0.07
CLN3-206ENST00000360019 LYPD2Q6UXB3 125 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 FGFRL1Q8N441 504 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 OR4A4PQ8NGN8 299 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 OR13A1Q8NGR1 328 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 UBALD1Q8TB05 177 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 MARCH1Q8TCQ1 289 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 KIRREL1Q96J84 757 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 FAM234AQ9H0X4 552 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 TAF9BQ9HBM6 251 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 MYOZ1Q9NP98 299 aaPredicted RBP15.47■□□□□ 0.07
CLN3-206ENST00000360019 MGAT4AQ9UM21 535 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 CENPEQ02224 2701 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 ODAMA1E959 279 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 MEX3AA1L020 520 aaKnown RBP15.47■□□□□ 0.07
CLN3-206ENST00000360019 CEACAM18A8MTB9 384 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 OVOL3O00110 214 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 BET1O15155 118 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 RLN1P04808 185 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 FCGR2CP31995 323 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 P2RX3P56373 397 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 PRR18Q8N4B5 295 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 OR5D13Q8NGL4 314 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 MRGPRDQ8TDS7 321 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 DCTN5Q9BTE1 182 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 CABLES2Q9BTV7 478 aa15.47■□□□□ 0.07
CLN3-206ENST00000360019 C12orf77C9JDV5 145 aa15.46■□□□□ 0.07
CLN3-206ENST00000360019 FSTL3O95633 263 aa15.46■□□□□ 0.07
CLN3-206ENST00000360019 IGHV2-70P01814 119 aa15.46■□□□□ 0.07
CLN3-206ENST00000360019 NFYAP23511 347 aaPredicted RBP15.46■□□□□ 0.07
CLN3-206ENST00000360019 EDDM3BP56851 147 aa15.46■□□□□ 0.07
CLN3-206ENST00000360019 CTSZQ9UBR2 303 aa15.46■□□□□ 0.07
CLN3-206ENST00000360019 SPG11Q96JI7 2443 aa15.46■□□□□ 0.07
CLN3-206ENST00000360019 A0A0A6YYJ9 748 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 ADAM20O43506 726 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 CTXN2P0C2S0 81 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 VSIG10L2P0DP72 767 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 SLC36A1Q7Z2H8 476 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 PEG10Q86TG7 708 aaKnown RBP15.45■□□□□ 0.06
CLN3-206ENST00000360019 ZDHHC22Q8N966 263 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 MED30Q96HR3 178 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 KAAG1Q9UBP8 84 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 TRBV6-7A0A0A0MS04 114 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 C7orf66A4D0T2 115 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 F12P00748 615 aaPredicted RBP15.45■□□□□ 0.06
CLN3-206ENST00000360019 COL8A1P27658 744 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 ERP29P30040 261 aaKnown RBP15.45■□□□□ 0.06
CLN3-206ENST00000360019 SSTR5P35346 364 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 GLP1RP43220 463 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 BAMBIQ13145 260 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 KCNJ8Q15842 424 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 AVPI1Q5T686 147 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 TMED4Q7Z7H5 227 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 ZNF295-AS1Q8N0V1 137 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 IL1F10Q8WWZ1 152 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 FXYD6Q9H0Q3 95 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 GHITMQ9H3K2 345 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 SLC25A10Q9UBX3 287 aaPredicted RBP15.45■□□□□ 0.06
CLN3-206ENST00000360019 ZNF221Q9UK13 617 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 PCDHB10Q9UN67 800 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 GPR132Q9UNW8 380 aa15.45■□□□□ 0.06
CLN3-206ENST00000360019 AADACP22760 399 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 FPR2P25090 351 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 C6orf183Q5T699 404 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 OR1L1Q8NH94 360 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 CAPSLQ8WWF8 208 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 LURAP1Q96LR2 239 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 C5orf66Q9H5L9 145 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 CHODLQ9H9P2 273 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 KCNIP1Q9NZI2 227 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 OR1A1Q9P1Q5 309 aa15.44■□□□□ 0.06
CLN3-206ENST00000360019 NDUFA2O43678 99 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 TUSC2O75896 110 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 EFNA4P52798 201 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 CR1LQ2VPA4 569 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 GLDNQ6ZMI3 551 aaPredicted RBP15.43■□□□□ 0.06
CLN3-206ENST00000360019 SEC22CQ9BRL7 303 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 NCOR1P1Q9H4R4 102 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 DSCAML1Q8TD84 2053 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 NPIPB11E5RHQ5 1161 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 C15orf65H3BRN8 121 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 PRAF2O60831 178 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 PPYP01298 95 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 HBZP02008 142 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 PI3P19957 117 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 FXYD4P59646 89 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 SURF2Q15527 256 aaPredicted RBP15.43■□□□□ 0.06
CLN3-206ENST00000360019 TCF23Q7RTU1 214 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 ZNF554Q86TJ5 538 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 ADAD2Q8NCV1 583 aaKnown RBP15.43■□□□□ 0.06
CLN3-206ENST00000360019 OR10J5Q8NHC4 309 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 MOB3AQ96BX8 217 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 C14orf79Q96F83 325 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms