RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 WIPF1O43516 503 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 MGMTP16455 207 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 GZMHP20718 246 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 GNG10P50151 68 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 C2orf68Q2NKX9 166 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 TMEM95Q3KNT9 176 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 RAB12Q6IQ22 244 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 FAM53AQ6NSI3 398 aaPredicted RBP14.7□□□□□ -0.06
CLN3-202ENST00000355477 LRRTM1Q86UE6 522 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 NKAIN3Q8N8D7 197 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 OR10A7Q8NGE5 316 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 FAM110DQ8TAY7 271 aaPredicted RBP14.7□□□□□ -0.06
CLN3-202ENST00000355477 NEK7Q8TDX7 302 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 WIPF2Q8TF74 440 aaPredicted RBP14.7□□□□□ -0.06
CLN3-202ENST00000355477 THRSPQ92748 146 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 ARL11Q969Q4 196 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 UQCC2Q9BRT2 126 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 SELENOIQ9C0D9 397 aa14.7□□□□□ -0.06
CLN3-202ENST00000355477 PLXNB1O43157 2135 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 A0A1W2PPE3 182 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 CRTAPO75718 401 aaPredicted RBP14.69□□□□□ -0.06
CLN3-202ENST00000355477 SC5DO75845 299 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 LIPKQ5VXJ0 399 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 SIGIRRQ6IA17 410 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 CEACAM19Q7Z692 300 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 Q96M66 194 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 OCSTAMPQ9BR26 566 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 WNT10AQ9GZT5 417 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 LIN7BQ9HAP6 207 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 PEX16Q9Y5Y5 336 aa14.69□□□□□ -0.06
CLN3-202ENST00000355477 NOTCH3Q9UM47 2321 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 OOSP1A8MZH6 123 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 MCRIP1C9JLW8 97 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 AIPO00170 330 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 AMY1AP04745 511 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 AMY2AP04746 511 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 CSF1P09603 554 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 CD28P10747 220 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 CRHBPP24387 322 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 ARHGDIBP52566 201 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 GPR50Q13585 617 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 CCDC144NLQ6NUI1 221 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 IZUMO2Q6UXV1 221 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 SLC16A12Q6ZSM3 486 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 C16orf82Q7Z2V1 217 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 LYG1Q8N1E2 194 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 TMEM203Q969S6 136 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 FAM46BQ96A09 425 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 RPEQ96AT9 228 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 RBM14Q96PK6 669 aaKnown RBP14.68□□□□□ -0.06
CLN3-202ENST00000355477 SLC25A33Q9BSK2 321 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 SPACA1Q9HBV2 294 aa14.68□□□□□ -0.06
CLN3-202ENST00000355477 AMMECR1Q9Y4X0 333 aaPredicted RBP14.68□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A10PA6NDY2 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A18PA6NE21 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A16PA6NEW6 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A20PA6NIJ5 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A7PA6NKC0 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A9PA6NNJ1 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A12PA8MX19 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A5PA8MXJ8 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A23PA8MXZ1 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 H3BUI4 141 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 RGS10O43665 173 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 ORC5O43913 435 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 OR2F2O95006 317 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A15PP0C7V4 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A13PP0C7W8 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A14PP0C7W9 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 FAM90A24PP0C7X0 464 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 SRMP19623 302 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 MNDAP41218 407 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 LOXL3P58215 753 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 MADCAM1Q13477 382 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 RBM48Q5RL73 367 aaKnown RBP14.67□□□□□ -0.06
CLN3-202ENST00000355477 C1orf100Q5SVJ3 147 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 SYT6Q5T7P8 510 aaPredicted RBP14.67□□□□□ -0.06
CLN3-202ENST00000355477 OR10K2Q6IF99 312 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 TMEM91Q6ZNR0 172 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 GAPTQ8N292 157 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 DRAM1Q8N682 238 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 OR4K15Q8NH41 348 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 CAPSLQ8WWF8 208 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 PHYHIPQ92561 330 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 TOMM40LQ969M1 308 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 ETAA1Q9NY74 926 aa14.67□□□□□ -0.06
CLN3-202ENST00000355477 IGHV3-43A0A0B4J1X8 118 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 A0A1W2PPI3 338 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 UBE2QL1A1L167 161 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 SH2D7A6NKC9 451 aaPredicted RBP14.66□□□□□ -0.06
CLN3-202ENST00000355477 SDCBPO00560 298 aaPredicted RBP14.66□□□□□ -0.06
CLN3-202ENST00000355477 FBXO24O75426 580 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 UCHL1P09936 223 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 HSMCR30P0CW71 290 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 IGHV3-43DP0DP04 118 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 CD37P11049 281 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 FUT3P21217 361 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 VDAC2P45880 294 aaPredicted RBP14.66□□□□□ -0.06
CLN3-202ENST00000355477 MAP2K4P45985 399 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 DEFA6Q01524 100 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 182.3 ms