RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 DOK5Q9P104 306 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 UQCR10Q9UDW1 63 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 RGRP47804 291 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 FAM210BQ96KR6 192 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 OR51B6Q9H340 312 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 RCL1Q9Y2P8 373 aaKnown RBP3.54□□□□□ -1.84
USH2A-201ENST00000307340 CEP250Q9BV73 2442 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 HELTA6NFD8 242 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 HOXB5P09067 269 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 GABRA4P48169 554 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 RHOGP84095 191 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 MRPL14Q6P1L8 145 aaKnown RBP3.54□□□□□ -1.84
USH2A-201ENST00000307340 ZNF611Q8N823 705 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 OR10Q1Q8NGQ4 319 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 OR5C1Q8NGR4 320 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 FMC1Q96HJ9 113 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 PPP1R3EQ9H7J1 279 aa3.54□□□□□ -1.84
USH2A-201ENST00000307340 PPP6CO00743 305 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 CEACAM5P06731 702 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 HLA-DRB3P79483 266 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 DLK2Q6UY11 383 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ABHD5Q8WTS1 349 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SMIM8Q96KF7 97 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 COA3Q9Y2R0 106 aaPredicted RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 CCL27Q9Y4X3 112 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 EML6Q6ZMW3 1958 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 DANCRP0C864 163 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 WNT3P56703 355 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ATXN7L3Q14CW9 347 aaPredicted RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 CST9Q5W186 159 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SYT8Q8NBV8 401 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ATP6V0BQ99437 205 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 RASL11BQ9BPW5 248 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 UBTD1Q9HAC8 227 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 LPAR2Q9HBW0 351 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 NAGKQ9UJ70 344 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SYNGR1O43759 233 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 TRGC1P0CF51 173 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ZNF705BP0CI00 300 aaPredicted RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 CA6P23280 308 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 NHLRC3Q5JS37 347 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 Q8WTZ3 238 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 CLEC1BQ9P126 229 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 RPL30P62888 115 aaKnown RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 ZNF273Q14593 569 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SLC25A53Q5H9E4 307 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 NKAIN2Q5VXU1 208 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 TMEM186Q96B77 213 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 TGIF2-C20orf24A0A0A6YYL0 155 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 TRBV5-5A0A0J9YX44 114 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 GPR6P46095 362 aaPredicted RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 PGGT1BP53609 377 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 LEXMQ3ZCV2 418 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 BPIFA4PQ86YQ2 179 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SMRP1Q8NCR6 262 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 APOBEC4Q8WW27 367 aaKnown RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 NDUFB3O43676 98 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 CD3DP04234 171 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 CLDN18P56856 261 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 OR2T2Q6IF00 324 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 GPR119Q8TDV5 335 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ZNF257Q9Y2Q1 563 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 A0A0G2JLM5 398 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 FAM231BA6NCW3 169 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 OOSP1A8MZH6 123 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ASAH2BP0C7U1 165 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 HTR6P50406 440 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ERV3-1Q14264 604 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 RHNO1Q9BSD3 238 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 CISD1Q9NZ45 108 aaKnown RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 LIPT2A6NK58 231 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 PTP4A3O75365 173 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ACSM6Q6P461 480 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 TRMT61AQ96FX7 289 aaKnown RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 TRAPPC1Q9Y5R8 145 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 BRWD1Q9NSI6 2320 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 CUL9Q8IWT3 2517 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SMPD2O60906 423 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 KLF9Q13886 244 aaPredicted RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 STUMQ69YW2 141 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ZNF705GA8MUZ8 300 aaPredicted RBP3.53□□□□□ -1.84
USH2A-201ENST00000307340 C11orf94C9JXX5 98 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 NPIPB6E9PJ23 425 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ZNF737O75373 536 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 PSG6Q00889 435 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SPATA31B1PQ5VZV4 182 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SLC35E4Q6ICL7 350 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ITGB1BP1O14713 200 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 RTN4RL2Q86UN3 420 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 FBXL14Q8N1E6 418 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 DNASE2BQ8WZ79 361 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SYNPO2LQ9H987 977 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 CYR61O00622 381 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 CLDN14O95500 239 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ONECUT2O95948 504 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 COX20Q5RI15 118 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 PIMREGQ9BSJ6 248 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 ZNF576Q9H609 170 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 SERTAD4Q9NUC0 356 aa3.53□□□□□ -1.84
USH2A-201ENST00000307340 PXMP4Q9Y6I8 212 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms