RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TNFRSF10CO14798 259 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 GDF9O60383 454 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 MPZL1O95297 269 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 SCGB1D2O95969 90 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 GCH1P30793 250 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 SLC6A6P31641 620 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 DEFB133Q30KQ1 61 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 LRRC10Q5BKY1 277 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 KIAA0895LQ68EN5 471 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 CENPVQ7Z7K6 275 aaPredicted RBP8.89□□□□□ -0.99
VPS39-214ENST00000614932 OOSP2Q86WS3 158 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 PNKDQ8N490 385 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 DTWD2Q8NBA8 298 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 PLPP7Q8NBV4 271 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 ST6GALNAC3Q8NDV1 305 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 OR5AU1Q8NGC0 362 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 LMX1AQ8TE12 382 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 ASB10Q8WXI3 467 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 KLHDC7BQ96G42 594 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 RTBDNQ9BSG5 229 aaPredicted RBP8.89□□□□□ -0.99
VPS39-214ENST00000614932 FOXQ1Q9C009 403 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 GPR84Q9NQS5 396 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 CKLFQ9UBR5 152 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 SERTAD3Q9UJW9 196 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 ASXL3Q9C0F0 2248 aa8.89□□□□□ -0.99
VPS39-214ENST00000614932 G3V3Y1 287 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 TGFBR3LH3BV60 316 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 GLB1P16278 677 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 ZNF10P21506 573 aaPredicted RBP8.88□□□□□ -0.99
VPS39-214ENST00000614932 GFERP55789 205 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 YPEL5P62699 121 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 SRPXP78539 464 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 ADIRFQ15847 76 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 CLEC12BQ2HXU8 276 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 Q7L0L9 218 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 ERASQ7Z444 233 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 TMEM123Q8N131 208 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 GATSQ8NAP1 163 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 OR1N2Q8NGR9 330 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 OR6K6Q8NGW6 343 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 TSEN15Q8WW01 171 aaKnown RBP8.88□□□□□ -0.99
VPS39-214ENST00000614932 ZNF703Q9H7S9 590 aaPredicted RBP8.88□□□□□ -0.99
VPS39-214ENST00000614932 MTHFD2LQ9H903 347 aaPredicted RBP8.88□□□□□ -0.99
VPS39-214ENST00000614932 C1orf123Q9NWV4 160 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 SEC16AO15027 2179 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 PPIAL4EA0A075B759 164 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 IGHV2-26A0A0B4J1V2 119 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 PPIAL4CA0A0B4J2A2 164 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 A0A1B0GVT2 93 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 ODAMA1E959 279 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 TMEM212A6NML5 194 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 PPIAL4DF5H284 164 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 TNFSF14O43557 240 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 GPR75O95800 540 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 PPIAL4FP0DN26 164 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 HIST1H1CP16403 213 aaKnown RBP8.88□□□□□ -0.99
VPS39-214ENST00000614932 ATP6V0CP27449 155 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 CEACAM3P40198 252 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 RAB9AP51151 201 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 GLYATL3Q5SZD4 288 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 TSTD1Q8NFU3 115 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 OR5B3Q8NH48 314 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 ZNRF4Q8WWF5 429 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 LRFN3Q9BTN0 628 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 HIF3AQ9Y2N7 669 aa8.88□□□□□ -0.99
VPS39-214ENST00000614932 A0A1B0GTH9 108 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 CDS2O95674 445 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 MT-CO2P00403 227 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 ZNF136P52737 540 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 FOXL2P58012 376 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 OR1Q1Q15612 314 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 C5orf64Q2M2E5 130 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 PRICKLE4Q2TBC4 344 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 AMMECR1LQ6DCA0 310 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 SHISA2Q6UWI4 295 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 SYT13Q7L8C5 426 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 VASH2Q86V25 355 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 TDHQ8IZJ6 230 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 OR1K1Q8NGR3 316 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 SARAFQ96BY9 339 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 BTF3L4Q96K17 158 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 ULBP3Q9BZM4 244 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 CISD1Q9NZ45 108 aaKnown RBP8.87□□□□□ -0.99
VPS39-214ENST00000614932 EHFQ9NZC4 300 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 CGGBP1Q9UFW8 167 aaPredicted RBP8.87□□□□□ -0.99
VPS39-214ENST00000614932 RFNGQ9Y644 331 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 SPACA6W5XKT8 324 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 CABIN1Q9Y6J0 2220 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 DIRC3C9JPN6 131 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 EMDP50402 254 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 FAM53BQ14153 422 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 BATF2Q8N1L9 274 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 TCTEX1D1Q8N7M0 179 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 FER1L6-AS1Q8NA97 138 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 CHST4Q8NCG5 386 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 NKD1Q969G9 470 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 MMABQ96EY8 250 aaPredicted RBP8.87□□□□□ -0.99
VPS39-214ENST00000614932 TNFRSF13CQ96RJ3 184 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 CALHM2Q9HA72 323 aa8.87□□□□□ -0.99
VPS39-214ENST00000614932 ABI3Q9P2A4 366 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms