RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TNFSF18Q9UNG2 199 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 E7EQL1 145 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 GEMIN2O14893 280 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 TTRP02766 147 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 TCRBP04435 133 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 PET100P0DJ07 73 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 FHITP49789 147 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 PRB3Q04118 309 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 OR2T5Q6IEZ7 315 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 RTN4RL2Q86UN3 420 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 TMEM104Q8NE00 496 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 OR2T29Q8NH02 315 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 FCGR1BQ92637 280 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 SNX22Q96L94 193 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 MICU1Q9BPX6 476 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 TMEM204Q9BSN7 226 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 CHST5Q9GZS9 411 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 RAB9BQ9NP90 201 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 COLCA2A8K830 154 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 TMEM229AB2RXF0 380 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 CCL25O15444 150 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 NDUFB2O95178 105 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 LCATP04180 440 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 RAB9AP51151 201 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 H3F3AP84243 136 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 TRAT1Q6PIZ9 186 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 NHLRC1Q6VVB1 395 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 DPY19L2P2Q6ZN68 376 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 TMEM179BQ7Z7N9 219 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 LYG1Q8N1E2 194 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 SLC22A24Q8N4F4 322 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 SMIM20Q8N5G0 67 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 OR1K1Q8NGR3 316 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 OR2AE1Q8NHA4 323 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF75AQ96N20 296 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 TMEM140Q9NV12 185 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 IKZF2Q9UKS7 526 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 PAM16Q9Y3D7 125 aa6.77□□□□□ -1.32
LIMCH1-219ENST00000514096 DHRS7CA6NNS2 312 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 GGCTO75223 188 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 OR2C1O95371 312 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 CSF1P09603 554 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF823P16415 610 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 AGAP20933 346 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 CALCRP30988 508 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 CDKN2AP42771 156 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 RPL23AP62750 156 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 RAP1AP62834 184 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 ADAM8P78325 824 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC35A2P78381 396 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 CRMP1Q14194 572 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 CD276Q5ZPR3 534 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 TMEM182Q6ZP80 229 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF101Q8IZC7 436 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 RNF138Q8WVD3 245 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 DPF1Q92782 380 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 HARBI1Q96MB7 349 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 PLK3Q9H4B4 646 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 TNFRSF19Q9NS68 423 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 MED9Q9NWA0 146 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 ELOVL5Q9NYP7 299 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 V9GYS6 101 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 ELOA3CA0A087WX78 387 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 IGHV1-18A0A0C4DH31 117 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF816-ZNF321PA0A0X1KG74 233 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 MCRIP1C9JLW8 97 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 SIVA1O15304 175 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 UBBP0CG47 229 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 OMGP23515 440 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 EPHA2P29317 976 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 CKS1BP61024 79 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 RPL27P61353 136 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 TSEN54Q7Z6J9 526 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC30A8Q8IWU4 369 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 C15orf54Q8N8G6 183 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 SLC30A7Q8NEW0 376 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 OR56B1Q8NGI3 324 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 NINJ1Q92982 152 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 MARVELD1Q9BSK0 173 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF426Q9BUY5 554 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 OR2J1Q9GZK6 312 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 TBL2Q9Y4P3 447 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 V9GYH0 126 aa6.77□□□□□ -1.33
LIMCH1-219ENST00000514096 CUBNO60494 3623 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 ZNF850A8MQ14 1090 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 PPIHO43447 177 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 NPIPB7O75200 414 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SERPINA5P05154 406 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CD99P14209 185 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 HOXA5P20719 270 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SOX2P48431 317 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 RAG2P55895 527 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 TIMM23BQ5SRD1 257 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 MBOAT2Q6ZWT7 520 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 GTF2H5Q6ZYL4 71 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 CXXC5Q7LFL8 322 aaKnown RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 OR8I2Q8N0Y5 310 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 OR13C5Q8NGS8 318 aa6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SPRYD4Q8WW59 207 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-219ENST00000514096 SELENOIQ9C0D9 397 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms