RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 C16orf52Q8NHV5 167 aa11.96□□□□□ -0.5
HDAC1-206ENST00000476391 PLPPR1Q8TBJ4 325 aa11.96□□□□□ -0.5
HDAC1-206ENST00000476391 SCGB1C1Q8TD33 95 aa11.96□□□□□ -0.5
HDAC1-206ENST00000476391 RERGQ96A58 199 aaPredicted RBP11.96□□□□□ -0.5
HDAC1-206ENST00000476391 PINX1Q96BK5 328 aaKnown RBP11.96□□□□□ -0.5
HDAC1-206ENST00000476391 TMEM56Q96MV1 263 aa11.96□□□□□ -0.5
HDAC1-206ENST00000476391 CCDC3Q9BQI4 270 aa11.96□□□□□ -0.5
HDAC1-206ENST00000476391 TMEM222Q9H0R3 208 aa11.96□□□□□ -0.5
HDAC1-206ENST00000476391 CST9LQ9H4G1 147 aa11.96□□□□□ -0.5
HDAC1-206ENST00000476391 ZNF703Q9H7S9 590 aaPredicted RBP11.96□□□□□ -0.5
HDAC1-206ENST00000476391 PATZ1Q9HBE1 687 aaKnown RBP11.96□□□□□ -0.5
HDAC1-206ENST00000476391 TMEM56-RWDD3S4R434 201 aa11.96□□□□□ -0.5
HDAC1-206ENST00000476391 C3orf85A0A1B0GTC6 90 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 FAM166BA8MTA8 275 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 RNF212BA8MTL3 300 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 PLPP3O14495 311 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 LILRB3O75022 631 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 HOXB2P14652 356 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 ZNF17P17021 662 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 MDH2P40926 338 aaKnown RBP11.95□□□□□ -0.5
HDAC1-206ENST00000476391 FAM78BQ5VT40 261 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 UNQ5815/PRO19632Q6UWF5 114 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 KLHDC1Q8N7A1 406 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 MRPL30Q8TCC3 161 aaKnown RBP11.95□□□□□ -0.5
HDAC1-206ENST00000476391 SMIM12Q96EX1 92 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 HDHD3Q9BSH5 251 aaPredicted RBP11.95□□□□□ -0.5
HDAC1-206ENST00000476391 TBX21Q9UL17 535 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 TP53TG3Q9ULZ0 132 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 IGKV1-9A0A0C4DH69 117 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 IGLON5A6NGN9 336 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 CCL1P22362 96 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 HOXC12P31275 282 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 ADMP35318 185 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 SEC13P55735 322 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 TCEA2Q15560 299 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 HNRNPA1L2Q32P51 320 aaKnown RBP11.95□□□□□ -0.5
HDAC1-206ENST00000476391 FAM57BQ71RH2 274 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 C1QL2Q7Z5L3 287 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 OR11L1Q8NGX0 322 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 LRRC3BQ96PB8 259 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 CDC42EP3Q9UKI2 254 aa11.95□□□□□ -0.5
HDAC1-206ENST00000476391 EDDM13A0A1B0GTR0 161 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 H0YGG7 62 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 UCP1P25874 307 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 PSMB3P49720 205 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 LINC00310P59036 64 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 ARF3P61204 181 aaPredicted RBP11.94□□□□□ -0.5
HDAC1-206ENST00000476391 RHOGP84095 191 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 KIR2DS3Q14952 304 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 ZNF695Q8IW36 515 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 C12orf76Q8N812 135 aaPredicted RBP11.94□□□□□ -0.5
HDAC1-206ENST00000476391 FLVCR1-AS1Q8TAF5 88 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 GPR146Q96CH1 333 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 SIGLEC12Q96PQ1 595 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 ZFYVE21Q9BQ24 234 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 RSG1Q9BU20 258 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 VSIRQ9H7M9 311 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 SLC35D1Q9NTN3 355 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 TMEM131Q92545 1883 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 MPPED1O15442 326 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 CHST1O43916 411 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 P2RY2P41231 377 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 EFNA3P52797 238 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 FMODQ06828 376 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 LDLRAD2Q5SZI1 272 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 PSRC1Q6PGN9 363 aaPredicted RBP11.94□□□□□ -0.5
HDAC1-206ENST00000476391 FIGLAQ6QHK4 219 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 C20orf196Q8IYI0 205 aa11.94□□□□□ -0.5
HDAC1-206ENST00000476391 PHPT1Q9NRX4 125 aaPredicted RBP11.94□□□□□ -0.5
HDAC1-206ENST00000476391 DIRC3C9JPN6 131 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 NPIPB7O75200 414 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 SERF1AO75920 110 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 CTSBP07858 339 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 NSDHLQ15738 373 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 DOK3Q7L591 496 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 Q8N976 141 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 LHX4Q969G2 390 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 STARD4Q96DR4 205 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 APOOQ9BUR5 198 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 OR10A5Q9H207 317 aa11.93□□□□□ -0.5
HDAC1-206ENST00000476391 MBNL1Q9NR56 388 aaKnown RBP11.93□□□□□ -0.5
HDAC1-206ENST00000476391 RBM7Q9Y580 266 aaKnown RBP11.93□□□□□ -0.5
HDAC1-206ENST00000476391 A0A1W2PQ45 241 aaPredicted RBP11.92□□□□□ -0.5
HDAC1-206ENST00000476391 A0A1W2PQY0 241 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 GRIFINA4D1Z8 144 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 ADAM20O43506 726 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 CISD3P0C7P0 127 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 PAX9P55771 341 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 CRIP3Q6Q6R5 217 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 MCEMP1Q8IX19 187 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 ZNF321PQ8N8H1 164 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 OR8B12Q8NGG6 310 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 FAM71F1Q96KD3 344 aaPredicted RBP11.92□□□□□ -0.5
HDAC1-206ENST00000476391 KLHDC3Q9BQ90 382 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 HDAC8Q9BY41 377 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 SAMD10Q9BYL1 202 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 ZNF586Q9NXT0 402 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 MLNRO43193 412 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 PIAS2O75928 621 aa11.92□□□□□ -0.5
HDAC1-206ENST00000476391 CRISP2P16562 243 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms