RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 OR1E3Q8WZA6 343 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM222Q9H0R3 208 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TBC1D29Q9UFV1 150 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TOMM40O96008 361 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 AMBPP02760 352 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CXCL1P09341 107 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 GNB3P16520 340 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 VDAC1P21796 283 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CPT2P23786 658 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 PPP1CCP36873 323 aaKnown RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 ARL6IP6Q8N6S5 226 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 SEC22AQ96IW7 307 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 NXT1Q9UKK6 140 aaKnown RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 S100A7P31151 101 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 HOXA4Q00056 320 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 FOXL1Q12952 345 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 SPPL3Q8TCT6 385 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 GSX1Q9H4S2 264 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TRAPPC2LQ9UL33 140 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TRAV20A0A0B4J274 112 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 IGHV3-20A0A0C4DH32 117 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 ST8SIA3O43173 380 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CYB5R3P00387 301 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 F12P00748 615 aaPredicted RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 IGHV3-9P01782 118 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 BIDP55957 195 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 PHLDA2Q53GA4 152 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM14EPQ6UXP3 125 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 ETV3LQ6ZN32 361 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CPEB2Q7Z5Q1 589 aaKnown RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 SHISA5Q8N114 240 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 SUMF1Q8NBK3 374 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 OR4N2Q8NGD1 307 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 FNDC9Q8TBE3 224 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 SECTM1Q8WVN6 248 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 SARAFQ96BY9 339 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 C14orf79Q96F83 325 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 BTF3L4Q96K17 158 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CABLES2Q9BTV7 478 aa4.63□□□□□ -1.67
SYNE1-220ENST00000471834 ZMAT3Q9HA38 289 aaKnown RBP4.63□□□□□ -1.67
SYNE1-220ENST00000471834 CCSO14618 274 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 POU3F1Q03052 451 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-220ENST00000471834 IL24Q13007 206 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 DHRS13Q6UX07 377 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 CHST11Q9NPF2 352 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 LOXL2Q9Y4K0 774 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 A8MXE2 369 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 CDRT15L2A8MXV6 281 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 SCRG1O75711 98 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 EMP2P54851 167 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 EIF4EBP1Q13541 118 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF385CQ66K41 422 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF573Q86YE8 665 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 SAXO1Q8IYX7 474 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PNKDQ8N490 385 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 OR4A16Q8NH70 328 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PSMF1Q92530 271 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 FOXQ1Q9C009 403 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PRDM6Q9NQX0 595 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 TUBG2Q9NRH3 451 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 SCN2AQ99250 2005 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 SERTM2A0A1B0GWG4 89 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 K7EPK0 472 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PGA3P0DJD8 388 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 HRH1P35367 487 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 GAMTQ14353 236 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 GGNBP1Q5YKI7 109 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 OR4S1Q8NGB4 309 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 ASB10Q8WXI3 467 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 FAM103A1Q9BTL3 118 aaKnown RBP4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PCED1AQ9H1Q7 454 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 C1orf123Q9NWV4 160 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 TAS2R4Q9NYW5 299 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 IGHV3-64DA0A0J9YX35 117 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 FCN1O00602 326 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 ZXDAP98168 799 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF92Q03936 586 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 RIPPLY2Q5TAB7 128 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 VWA1Q6PCB0 445 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 SLC22A25Q6T423 547 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 DOK3Q7L591 496 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 ADAD2Q8NCV1 583 aaKnown RBP4.62□□□□□ -1.67
SYNE1-220ENST00000471834 POC1BQ8TC44 478 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 IFI44Q8TCB0 444 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 BSCL2Q96G97 398 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-220ENST00000471834 NAA60Q9H7X0 242 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 TAF9BQ9HBM6 251 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 SHANK1Q9Y566 2161 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PMS2P5A8MQ11 134 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PPP5D1E7EU14 171 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PRKNO60260 465 aaPredicted RBP4.62□□□□□ -1.67
SYNE1-220ENST00000471834 OR10J4P0C629 311 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 COX5BP10606 129 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 TDGF1P3P51864 188 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 PDZD11Q5EBL8 140 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 WDFY1Q8IWB7 410 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF664Q8N3J9 261 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 RBMXL3Q8N7X1 1067 aaKnown RBP4.62□□□□□ -1.67
SYNE1-220ENST00000471834 OR5L1Q8NGL2 311 aa4.62□□□□□ -1.67
SYNE1-220ENST00000471834 NKX3-1Q99801 234 aaPredicted RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms