RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 C20orf85Q9H1P6 137 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 OR51B6Q9H340 312 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 RPS6KB2Q9UBS0 482 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 BTNL2Q9UIR0 455 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 CFL2Q9Y281 166 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 HELTA6NFD8 242 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 E9PBE3 544 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 H0Y9J4 135 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 FOXE1O00358 373 aaPredicted RBP2.53□□□□□ -2
VPS13A-210ENST00000471439 CCRL2O00421 344 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 PRMT5O14744 637 aaPredicted RBP2.53□□□□□ -2
VPS13A-210ENST00000471439 OVOL1O14753 267 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 HSD17B6O14756 317 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 SNAPINO95295 136 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 OXSR1O95747 527 aaPredicted RBP2.53□□□□□ -2
VPS13A-210ENST00000471439 CYB5R3P00387 301 aaPredicted RBP2.53□□□□□ -2
VPS13A-210ENST00000471439 MOSP00540 346 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 CPMP14384 443 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 COX7A1P24310 79 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 BTCP35070 178 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 DDOSTP39656 456 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 RGS6P49758 472 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 KRTAP10-4P60372 401 aaPredicted RBP2.53□□□□□ -2
VPS13A-210ENST00000471439 TNFAIP6P98066 277 aaPredicted RBP2.53□□□□□ -2
VPS13A-210ENST00000471439 CDK16Q00536 496 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 UNC119Q13432 240 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 RIPK1Q13546 671 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 HES1Q14469 280 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 MOGQ16653 247 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 KRTAP6-3Q3LI67 103 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 FAM173BQ6P4H8 233 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 SUMF2Q8NBJ7 301 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 OR11H1Q8NG94 326 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 OR9G1Q8NH87 305 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 DNAJA4Q8WW22 397 aaPredicted RBP2.53□□□□□ -2
VPS13A-210ENST00000471439 MAIP1Q8WWC4 291 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 C11orf40Q8WZ69 217 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 UBE2E3Q969T4 207 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 TMEM106AQ96A25 262 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 AIF1LQ9BQI0 150 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 PARD6BQ9BYG5 372 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 REEP4Q9H6H4 257 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 THUMPD1Q9NXG2 353 aaKnown RBP2.53□□□□□ -2
VPS13A-210ENST00000471439 SLC7A8Q9UHI5 535 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 HEY1Q9Y5J3 304 aa2.53□□□□□ -2
VPS13A-210ENST00000471439 KMT2DO14686 5537 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 A0A1B0GVL5 298 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 VGLL3A8MV65 326 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 KRTAP4-16G5E9R7 235 aaPredicted RBP2.52□□□□□ -2.01
VPS13A-210ENST00000471439 PLPP1O14494 284 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 RIPK2O43353 540 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 FCN3O75636 299 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 H6PDO95479 791 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 IFNA10P01566 189 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 GAPDHP04406 335 aaKnown RBP2.52□□□□□ -2.01
VPS13A-210ENST00000471439 HSMCR30P0CW71 290 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 TAGLN2P37802 199 aaKnown RBP2.52□□□□□ -2.01
VPS13A-210ENST00000471439 WNT4P56705 351 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 SEC61GP60059 68 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 MRPS22P82650 360 aaKnown RBP2.52□□□□□ -2.01
VPS13A-210ENST00000471439 OXA1LQ15070 435 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 ABCA11PQ4W5N1 156 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 CTSL3PQ5NE16 218 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 CTRB2Q6GPI1 263 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 C1orf94Q6P1W5 598 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 ZNF571Q7Z3V5 609 aaPredicted RBP2.52□□□□□ -2.01
VPS13A-210ENST00000471439 CCDC50Q8IVM0 306 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 DYNAPQ8N1N2 210 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 EIF1ADQ8N9N8 165 aaKnown RBP2.52□□□□□ -2.01
VPS13A-210ENST00000471439 OR52R1Q8NGF1 315 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 OR51S1Q8NGJ8 323 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 FANK1Q8TC84 345 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 UFD1Q92890 307 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 TUBGCP3Q96CW5 907 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 C10orf35Q96D05 121 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 RBM14Q96PK6 669 aaKnown RBP2.52□□□□□ -2.01
VPS13A-210ENST00000471439 KCNA7Q96RP8 456 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 MBOAT4Q96T53 435 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 ZNF639Q9UID6 485 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 PITPNC1Q9UKF7 332 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 COPS3Q9UNS2 423 aa2.52□□□□□ -2.01
VPS13A-210ENST00000471439 RPL36Q9Y3U8 105 aaKnown RBP2.52□□□□□ -2.01
VPS13A-210ENST00000471439 SNTNA6NMZ2 147 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 TIMM8AO60220 97 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-210ENST00000471439 SCGNO76038 276 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 INSP01308 110 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 HLA-HP01893 362 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 SNRPAP09012 282 aaKnown RBP2.51□□□□□ -2.01
VPS13A-210ENST00000471439 CHTF8P0CG12 524 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 CTRB1P17538 263 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 BMI1P35226 326 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 EIF1P41567 113 aaKnown RBP2.51□□□□□ -2.01
VPS13A-210ENST00000471439 REG3AQ06141 175 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 ARFRP1Q13795 201 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 TBC1D28Q2M2D7 210 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 TRMT12Q53H54 448 aaKnown RBP2.51□□□□□ -2.01
VPS13A-210ENST00000471439 HCP5Q6MZN7 132 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 TMIGD1Q6UXZ0 262 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 Q6ZN92 141 aa2.51□□□□□ -2.01
VPS13A-210ENST00000471439 TMPPEQ6ZT21 453 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms