RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 HTR3BO95264 441 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A15PP0C7V4 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A13PP0C7W8 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A14PP0C7W9 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A24PP0C7X0 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 CD33P20138 364 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 DCKP27707 260 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 ETV1P50549 477 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 SMN1Q16637 294 aaKnown RBP13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 XAF1Q6GPH4 301 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 TMPRSS11AQ6ZMR5 421 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 ZNF555Q8NEP9 628 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 OR10A7Q8NGE5 316 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 TMEM106AQ96A25 262 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 RDH12Q96NR8 316 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 IL36GQ9NZH8 169 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 MOB4Q9Y3A3 225 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 HSPE1-MOB4S4R3N1 261 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 PF4V1P10720 104 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 PPP3R1P63098 170 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 MADCAM1Q13477 382 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 NHLRC3Q5JS37 347 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 C9orf152Q5JTZ5 239 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 OR2G6Q5TZ20 316 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 SLC16A12Q6ZSM3 486 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 MRAPQ8TCY5 172 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 MRGPRDQ8TDS7 321 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 LEAP2Q969E1 77 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 MYDGFQ969H8 173 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 DPCDQ9BVM2 203 aaPredicted RBP13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 METTL9Q9H1A3 318 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 IFT22Q9H7X7 185 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 TMEM138Q9NPI0 162 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 SMPD3Q9NY59 655 aaPredicted RBP13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 PSG11Q9UQ72 335 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 ST3GAL6Q9Y274 331 aa13.18□□□□□ -0.3
CCDC28B-204ENST00000469003 A0A1W2PPI3 338 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 IRGMA1A4Y4 181 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 OGG1O15527 345 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 CDRT1O95170 752 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 IGHV3-7P01780 117 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 PF4P02776 101 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 SNRNP70P08621 437 aaKnown RBP13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 ZNF93P35789 620 aaPredicted RBP13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 RAB7AP51149 207 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 RBM11P57052 281 aaKnown RBP13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 LOXL3P58215 753 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 LTC4SQ16873 150 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 DDI2Q5TDH0 399 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 C10orf99Q6UWK7 81 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 OR8H3Q8N146 312 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 OSR2Q8N2R0 312 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 SUMF2Q8NBJ7 301 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 OR56B4Q8NH76 319 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 RFESDQ8TAC1 157 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 AURKAIP1Q9NWT8 199 aaPredicted RBP13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 ING4Q9UNL4 249 aa13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 SIRT4Q9Y6E7 314 aaPredicted RBP13.17□□□□□ -0.3
CCDC28B-204ENST00000469003 KMT2CQ8NEZ4 4911 aaKnown RBP13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 OR7C1O76099 320 aaPredicted RBP13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 BAG2O95816 211 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 CSTBP04080 98 aaKnown RBP13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 IGLL1P15814 213 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 BDKRB2P30411 391 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 SSTR5P35346 364 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 GNG10P50151 68 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 FOXB2Q5VYV0 432 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 LINC00596Q86U02 117 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 DRAM1Q8N682 238 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 OR52N1Q8NH53 320 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 SMIM19Q96E16 107 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 PAK1IP1Q9NWT1 392 aaPredicted RBP13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 BABAM2Q9NXR7 383 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 ZNF581Q9P0T4 197 aa13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 DIMT1Q9UNQ2 313 aaKnown RBP13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 EXOSC1Q9Y3B2 195 aaKnown RBP13.16□□□□□ -0.3
CCDC28B-204ENST00000469003 DNAH3Q8TD57 4116 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 TRAV39A0A0B4J263 110 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 TMEM11P17152 192 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 MYL12AP19105 171 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 GZMHP20718 246 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 SERPINA2P20848 420 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 SLC35A2P78381 396 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 DIAPH2-AS1Q14236 149 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 HES1Q14469 280 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 MPV17LQ2QL34 196 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 KHDC1LQ5JSQ8 128 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 C5orf56Q8N8D9 126 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 OR10X1Q8NGY0 326 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 S100A13Q99584 98 aa13.15□□□□□ -0.3
CCDC28B-204ENST00000469003 TRBV5-5A0A0J9YX44 114 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 TMEM30CPA0ZSE6 113 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 PSMB11A5LHX3 300 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 EBAG9O00559 213 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 GEMIN2O14893 280 aaKnown RBP13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 FGF16O43320 207 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 ZNF780AO75290 641 aaPredicted RBP13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 LALBAP00709 142 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 IGFBP3P17936 291 aaPredicted RBP13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 ZNF816Q0VGE8 651 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 170.8 ms