RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TMEM138Q9NPI0 162 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 CHCHD3Q9NX63 227 aaKnown RBP5.65□□□□□ -1.5
VPS41-208ENST00000448833 IDI2-AS1Q9NZ38 188 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 IL36RNQ9UBH0 155 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 CKLFQ9UBR5 152 aa5.65□□□□□ -1.5
VPS41-208ENST00000448833 NOTCH3Q9UM47 2321 aa5.65□□□□□ -1.51
VPS41-208ENST00000448833 PRKDCP78527 4128 aaKnown RBP5.64□□□□□ -1.51
VPS41-208ENST00000448833 A0A1W2PRX2 142 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A18PA6NE21 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A16PA6NEW6 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A20PA6NIJ5 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A9PA6NNJ1 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 ADARB2-AS1A8MUL3 147 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A12PA8MX19 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A5PA8MXJ8 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 NPIPB11E5RHQ5 1161 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 E9PQ18 207 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 MMP23AO75900 390 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 IL1AP01583 271 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 GAPDHP04406 335 aaKnown RBP5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A15PP0C7V4 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A13PP0C7W8 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A14PP0C7W9 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A24PP0C7X0 464 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 CGB3P0DN86 165 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 CGB7P0DN87 165 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 MYL12AP19105 171 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 IL3RAP26951 378 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 DCKP27707 260 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 GLP1RP43220 463 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 ZP1P60852 638 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 HES1Q14469 280 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 ATXN7L3Q14CW9 347 aaPredicted RBP5.64□□□□□ -1.51
VPS41-208ENST00000448833 C17orf58Q2M2W7 97 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 MPV17LQ2QL34 196 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 NHLRC3Q5JS37 347 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 KHDC1LQ5JSQ8 128 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 C9orf152Q5JTZ5 239 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FOXB2Q5VYV0 432 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 ZNF529Q6P280 563 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 UNQ9370/PRO34162Q6UXP9 181 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 ASCL4Q6XD76 172 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 Q6ZS46 218 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 STX19Q8N4C7 294 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 C8orf31Q8N9H6 132 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 OR52M1Q8NGK5 317 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 TNFAIP8L1Q8WVP5 186 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 THRSPQ92748 146 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 MYDGFQ969H8 173 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 MRPS24Q96EL2 167 aaKnown RBP5.64□□□□□ -1.51
VPS41-208ENST00000448833 COQ2Q96H96 371 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 FAM192AQ9GZU8 254 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 ISG20L2Q9H9L3 353 aaKnown RBP5.64□□□□□ -1.51
VPS41-208ENST00000448833 C8orf4Q9NR00 106 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 CALYQ9NYX4 217 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 IL36GQ9NZH8 169 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 KIF25Q9UIL4 384 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 ST3GAL6Q9Y274 331 aa5.64□□□□□ -1.51
VPS41-208ENST00000448833 TMEM30CPA0ZSE6 113 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 GABRPO00591 440 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 TXNL1O43396 289 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 ORC5O43913 435 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 CA11O75493 328 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 OR7C1O76099 320 aaPredicted RBP5.63□□□□□ -1.51
VPS41-208ENST00000448833 HTR3BO95264 441 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 GTF2F2P13984 249 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 TMEM11P17152 192 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 GABRB1P18505 474 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 CD24P25063 80 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 BDKRB2P30411 391 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 ZNF93P35789 620 aaPredicted RBP5.63□□□□□ -1.51
VPS41-208ENST00000448833 Q3ZCU0 254 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 STEAP3Q658P3 488 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 TRAT1Q6PIZ9 186 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 CDH26Q8IXH8 852 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 OR8H1Q8NGG4 311 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 OR51A2Q8NGJ7 313 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 OR52I1Q8NGK6 324 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 OR10AC1Q8NH08 325 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 OR52N1Q8NH53 320 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 TMEM106AQ96A25 262 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 PDCD1LG2Q9BQ51 273 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 DPCDQ9BVM2 203 aaPredicted RBP5.63□□□□□ -1.51
VPS41-208ENST00000448833 FGF20Q9NP95 211 aaPredicted RBP5.63□□□□□ -1.51
VPS41-208ENST00000448833 AURKAIP1Q9NWT8 199 aaPredicted RBP5.63□□□□□ -1.51
VPS41-208ENST00000448833 BABAM2Q9NXR7 383 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 ING3Q9NXR8 418 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 ING4Q9UNL4 249 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 PSG11Q9UQ72 335 aa5.63□□□□□ -1.51
VPS41-208ENST00000448833 TRAV24A0A0B4J272 114 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 FAM172BPA6NC97 362 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 SERPINE3A8MV23 424 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 MCRIP1C9JLW8 97 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 H3BNX3 289 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 AP4M1O00189 453 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 HSPB6O14558 160 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 OGG1O15527 345 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 SPINT2O43291 252 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 RRP9O43818 475 aaKnown RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 GPX5O75715 221 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 754.5 ms