RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 DKK1O94907 266 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 CCL3P10147 92 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 CD200P41217 278 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 KMT5CQ86Y97 462 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 IL22RA1Q8N6P7 574 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 CCL28Q9NRJ3 127 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 FAM86C1Q9NVL1 165 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 A0A0J9YW62 118 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 LOC102725191A0A1B0GVB3 256 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF732B4DXR9 585 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 RPL36A-HNRNPH2H7BZ11 118 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 HSPA12AO43301 675 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 UCP3P55916 312 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 RBM11P57052 281 aaKnown RBP15.86■□□□□ 0.13
CCDC3-201ENST00000378825 RPS18P62269 152 aaKnown RBP15.86■□□□□ 0.13
CCDC3-201ENST00000378825 ZFP36L1Q07352 338 aaKnown RBP15.86■□□□□ 0.13
CCDC3-201ENST00000378825 PLCXD3Q63HM9 321 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 DPPA2Q7Z7J5 298 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF295-AS1Q8N0V1 137 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 SMDT1Q9H4I9 107 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 UNKLQ9H9P5 680 aaKnown RBP15.86■□□□□ 0.13
CCDC3-201ENST00000378825 NBEAQ8NFP9 2946 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 CXCL12P48061 93 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 CNN3Q15417 329 aaKnown RBP15.86■□□□□ 0.13
CCDC3-201ENST00000378825 NMSQ5H8A3 153 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 FOXL2NBQ6ZUU3 175 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 SSX9Q7RTT3 188 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 MAML2Q8IZL2 1156 aaPredicted RBP15.86■□□□□ 0.13
CCDC3-201ENST00000378825 TAAR3PQ9P1P4 343 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 ESPL1Q14674 2120 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 DOCK7Q96N67 2140 aa15.86■□□□□ 0.13
CCDC3-201ENST00000378825 K7ESF4 209 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 CLEC12BQ2HXU8 276 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 WDR25Q64LD2 544 aaPredicted RBP15.85■□□□□ 0.13
CCDC3-201ENST00000378825 ASCL4Q6XD76 172 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF611Q8N823 705 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 GTF3AQ92664 365 aaKnown RBP15.85■□□□□ 0.13
CCDC3-201ENST00000378825 RPRMQ9NS64 109 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 FAM27BQ5VT28 67 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 SLC23A3Q6PIS1 610 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 RABEPKQ7Z6M1 372 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 OR1F12Q8NHA8 337 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 PACRGQ96M98 296 aaPredicted RBP15.85■□□□□ 0.13
CCDC3-201ENST00000378825 TMEM56Q96MV1 263 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 HIST1H2BLQ99880 126 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 TMEM56-RWDD3S4R434 201 aa15.85■□□□□ 0.13
CCDC3-201ENST00000378825 A0A087X0M5 115 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 IGHV5-10-1A0A0J9YXX1 117 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 LOC102723971A0A1B0GUV8 181 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 A0A1B0GX30 115 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 DDTP30046 118 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 ID3Q02535 119 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF726P1Q15940 193 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 LHFPL2Q6ZUX7 228 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 EXTL1Q92935 676 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 C10orf35Q96D05 121 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 SLC25A31Q9H0C2 315 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 OCIAD1Q9NX40 245 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 RARRES3Q9UL19 164 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 IGKV1-6A0A0C4DH72 117 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 SLC22A20A6NK97 555 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 PHOX2AO14813 284 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 ZIC3O60481 467 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 EXT1Q16394 746 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 SLC35E3Q7Z769 313 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 CCDC74BQ96LY2 380 aa15.84■□□□□ 0.13
CCDC3-201ENST00000378825 IGHV3-9P01782 118 aa15.83■□□□□ 0.13
CCDC3-201ENST00000378825 IL2RGP31785 369 aa15.83■□□□□ 0.13
CCDC3-201ENST00000378825 PSG4Q00888 419 aa15.83■□□□□ 0.13
CCDC3-201ENST00000378825 UFSP2Q9NUQ7 469 aa15.83■□□□□ 0.13
CCDC3-201ENST00000378825 RNF115Q9Y4L5 304 aa15.83■□□□□ 0.13
CCDC3-201ENST00000378825 LY6G6EA0A0G2JKS1 128 aa15.83■□□□□ 0.12
CCDC3-201ENST00000378825 BTBD17A6NE02 478 aa15.83■□□□□ 0.12
CCDC3-201ENST00000378825 PTBP3O95758 552 aaKnown RBP15.83■□□□□ 0.12
CCDC3-201ENST00000378825 TMEM42Q69YG0 159 aa15.83■□□□□ 0.12
CCDC3-201ENST00000378825 NECAP1Q8NC96 275 aa15.83■□□□□ 0.12
CCDC3-201ENST00000378825 PROK2Q9HC23 129 aa15.83■□□□□ 0.12
CCDC3-201ENST00000378825 U3KQA8 63 aa15.83■□□□□ 0.12
CCDC3-201ENST00000378825 BCL3P20749 454 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 MRPS34P82930 218 aaKnown RBP15.82■□□□□ 0.12
CCDC3-201ENST00000378825 RAB35Q15286 201 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 SIRT7Q9NRC8 400 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 hCG_38984A0A1B0GV85 526 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 SNRPCP09234 159 aaKnown RBP15.82■□□□□ 0.12
CCDC3-201ENST00000378825 TAS2R30P59541 319 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 TLE4Q04727 773 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 ARL16Q0P5N6 197 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 SLC25A24Q6NUK1 477 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 Q6ZRM9 215 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 BEND4Q6ZU67 534 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 OR8G5Q8NG78 346 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 OR51H1Q8NH63 302 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 GNPNAT1Q96EK6 184 aaPredicted RBP15.82■□□□□ 0.12
CCDC3-201ENST00000378825 ATP5SQ99766 215 aa15.82■□□□□ 0.12
CCDC3-201ENST00000378825 FGF23Q9GZV9 251 aaPredicted RBP15.82■□□□□ 0.12
CCDC3-201ENST00000378825 A0A1B0GU03 582 aa15.81■□□□□ 0.12
CCDC3-201ENST00000378825 EDN3P14138 238 aa15.81■□□□□ 0.12
CCDC3-201ENST00000378825 EPHA8P29322 1005 aaPredicted RBP15.81■□□□□ 0.12
CCDC3-201ENST00000378825 TMEM211Q6ICI0 200 aa15.81■□□□□ 0.12
CCDC3-201ENST00000378825 C1orf87Q8N0U7 546 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms