RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 IGKV1-13P0DP09 117 aa16.4■□□□□ 0.22
RTN4-201ENST00000317610 PAX9P55771 341 aa16.4■□□□□ 0.22
RTN4-201ENST00000317610 HERPUD1Q15011 391 aa16.4■□□□□ 0.22
RTN4-201ENST00000317610 RNPS1Q15287 305 aaKnown RBP16.4■□□□□ 0.22
RTN4-201ENST00000317610 ABLIM2Q6H8Q1 611 aa16.4■□□□□ 0.22
RTN4-201ENST00000317610 GGNQ86UU5 652 aa16.4■□□□□ 0.22
RTN4-201ENST00000317610 OR13D1Q8NGV5 346 aa16.4■□□□□ 0.22
RTN4-201ENST00000317610 KCNE4Q8WWG9 221 aa16.4■□□□□ 0.22
RTN4-201ENST00000317610 PHF7Q9BWX1 381 aaPredicted RBP16.4■□□□□ 0.22
RTN4-201ENST00000317610 GAR1Q9NY12 217 aaKnown RBP16.4■□□□□ 0.22
RTN4-201ENST00000317610 SCTP09683 121 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 RGS19P49795 217 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 CEACAM16Q2WEN9 425 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 CMTM1Q8IZ96 169 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 PRDM14Q9GZV8 571 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 TNRC6BQ9UPQ9 1833 aaKnown RBP16.39■□□□□ 0.21
RTN4-201ENST00000317610 LOC102723971A0A1B0GUV8 181 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 B4DEV8 164 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 H0Y980 276 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 CHST1O43916 411 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 MMP7P09237 267 aaPredicted RBP16.39■□□□□ 0.21
RTN4-201ENST00000317610 S100A2P29034 98 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 SRD5A2P31213 254 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 CARD18P57730 90 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 MLF1P58340 268 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 SAXO1Q8IYX7 474 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 TMEM217Q8N7C4 229 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 CALHM2Q9HA72 323 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 HS3ST3B1Q9Y662 390 aa16.39■□□□□ 0.21
RTN4-201ENST00000317610 SEC14L6B5MCN3 397 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BKO60814 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BJP06899 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BOP23527 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BBP33778 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 CEBPGP53567 150 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BDP58876 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BCP62807 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 ZNF154Q13106 437 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST2H2BEQ16778 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.38■□□□□ 0.21
RTN4-201ENST00000317610 ZNF468Q5VIY5 522 aaPredicted RBP16.38■□□□□ 0.21
RTN4-201ENST00000317610 COLCA1Q6ZS62 124 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 C5orf24Q7Z6I8 188 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 RPS19BP1Q86WX3 136 aaKnown RBP16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BHQ93079 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BNQ99877 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 HIST1H2BMQ99879 126 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 OPA3Q9H6K4 179 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 GPR35Q9HC97 309 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 TAAR3PQ9P1P4 343 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 SDK1Q7Z5N4 2213 aa16.38■□□□□ 0.21
RTN4-201ENST00000317610 TGIF2-C20orf24A0A0A6YYL0 155 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 YKT6O15498 198 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 BCL3P20749 454 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 FGF12P61328 243 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 RPL23AP62750 156 aaKnown RBP16.37■□□□□ 0.21
RTN4-201ENST00000317610 NAT6Q93015 286 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 KIR2DS1A0A191URI9 304 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 KLF7O75840 302 aaPredicted RBP16.37■□□□□ 0.21
RTN4-201ENST00000317610 DFFBO76075 338 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 CTXN2P0C2S0 81 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 KIR2DS4P43632 304 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 HLA-DRB3P79483 266 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 KIR2DS1Q14954 304 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 SPNS3Q6ZMD2 512 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 BATF2Q8N1L9 274 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 SPEM1Q8N4L4 309 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 ADGRG7Q96K78 797 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 GPHA2Q96T91 129 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 CCL28Q9NRJ3 127 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 CACNA1EQ15878 2313 aa16.37■□□□□ 0.21
RTN4-201ENST00000317610 IL11RAQ14626 422 aa16.36■□□□□ 0.21
RTN4-201ENST00000317610 FGF23Q9GZV9 251 aaPredicted RBP16.36■□□□□ 0.21
RTN4-201ENST00000317610 IGKV1-6A0A0C4DH72 117 aa16.36■□□□□ 0.21
RTN4-201ENST00000317610 F10P00742 488 aa16.36■□□□□ 0.21
RTN4-201ENST00000317610 SLC25A6P12236 298 aa16.36■□□□□ 0.21
RTN4-201ENST00000317610 MPV17LQ2QL34 196 aa16.36■□□□□ 0.21
RTN4-201ENST00000317610 YRDCQ86U90 279 aaKnown RBP16.36■□□□□ 0.21
RTN4-201ENST00000317610 AGBL5Q8NDL9 886 aa16.36■□□□□ 0.21
RTN4-201ENST00000317610 NOSIPQ9Y314 301 aaKnown RBP16.36■□□□□ 0.21
RTN4-201ENST00000317610 ATP23Q9Y6H3 246 aa16.36■□□□□ 0.21
RTN4-201ENST00000317610 URGCP-MRPS24S4R325 110 aa16.36■□□□□ 0.21
RTN4-201ENST00000317610 ELOA3CA0A087WX78 387 aaPredicted RBP16.35■□□□□ 0.21
RTN4-201ENST00000317610 CXCL13O43927 109 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 GDF9O60383 454 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 PGLYRP1O75594 196 aaPredicted RBP16.35■□□□□ 0.21
RTN4-201ENST00000317610 DNLZQ5SXM8 178 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 FAM90A2PQ658T7 463 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 H1FOOQ8IZA3 346 aaPredicted RBP16.35■□□□□ 0.21
RTN4-201ENST00000317610 ZNF295-AS1Q8N0V1 137 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 TMEM242Q9NWH2 141 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 NCKAP5O14513 1909 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 KIAA1324LA8MWY0 1029 aaPredicted RBP16.35■□□□□ 0.21
RTN4-201ENST00000317610 RND2P52198 227 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 NRN1LQ496H8 165 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 STX12Q86Y82 276 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 CPEB3Q8NE35 698 aaKnown RBP16.35■□□□□ 0.21
RTN4-201ENST00000317610 SAP25Q8TEE9 199 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 HS3ST6Q96QI5 342 aa16.35■□□□□ 0.21
RTN4-201ENST00000317610 ZNF576Q9H609 170 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms