RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 IGKV1-6A0A0C4DH72 117 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 TRDCB7Z8K6 153 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 CDIPTO14735 213 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 CEACAM4O75871 244 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 SLC34A2O95436 690 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 GRPP07492 148 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 ZNF169Q14929 603 aaPredicted RBP13.89□□□□□ -0.19
COL4A1-204ENST00000543140 OR2A2Q6IF42 318 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 LIAT1Q6ZQX7 453 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 CCDC36Q8IYA8 594 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 WDR31Q8NA23 367 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 LHFPL5Q8TAF8 219 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 AQP10Q96PS8 301 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 PLSCR2Q9NRY7 297 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 LUZP4Q9P127 313 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 IGKV1D-13A0A0B4J2D9 117 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 DEGS1O15121 323 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 DIRAS3O95661 229 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 IGKV1-13P0DP09 117 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 TPT1P13693 172 aaKnown RBP13.89□□□□□ -0.19
COL4A1-204ENST00000543140 Q6ZS49 121 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 BAP18Q8IXM2 172 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 ZNF610Q8N9Z0 462 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 BVESQ8NE79 360 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 MRPL30Q8TCC3 161 aaKnown RBP13.89□□□□□ -0.19
COL4A1-204ENST00000543140 TMED6Q8WW62 240 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 MSI2Q96DH6 328 aaKnown RBP13.89□□□□□ -0.19
COL4A1-204ENST00000543140 SUCNR1Q9BXA5 334 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 SHARPINQ9H0F6 387 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 OPN3Q9H1Y3 402 aaPredicted RBP13.89□□□□□ -0.19
COL4A1-204ENST00000543140 DKK4Q9UBT3 224 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 FZR1Q9UM11 496 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 ATP23Q9Y6H3 246 aa13.89□□□□□ -0.19
COL4A1-204ENST00000543140 LOC105371267A0A1B0GV96 52 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 SIRPB1O00241 398 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 MPPED1O15442 326 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 TUSC1Q2TAM9 212 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 CXorf67Q86X51 503 aaPredicted RBP13.88□□□□□ -0.19
COL4A1-204ENST00000543140 CCDC71LQ8N9Z2 235 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 KLF14Q8TD94 323 aaPredicted RBP13.88□□□□□ -0.19
COL4A1-204ENST00000543140 BARX1Q9HBU1 254 aaPredicted RBP13.88□□□□□ -0.19
COL4A1-204ENST00000543140 SPACA1Q9HBV2 294 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 TUBD1Q9UJT1 453 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 TINAGQ9UJW2 476 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 A8MXK9 166 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 WDR1O75083 606 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 FGF2P09038 288 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 HKR1P10072 659 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 ZNF154Q13106 437 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 ALKBH2Q6NS38 261 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 ZNF818PQ6ZRF7 136 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 ZNF565Q8N9K5 539 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 STOML3Q8TAV4 291 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 C18orf12Q96KH6 178 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 SLC5A7Q9GZV3 580 aa13.88□□□□□ -0.19
COL4A1-204ENST00000543140 KIR2DS1A0A191URI9 304 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 C3orf85A0A1B0GTC6 90 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 DEDDO75618 318 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 MBPP02686 304 aaPredicted RBP13.87□□□□□ -0.19
COL4A1-204ENST00000543140 RAC2P15153 192 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 CBR1P16152 277 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 COX5AP20674 150 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 KIR2DS4P43632 304 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 HOXA4Q00056 320 aaPredicted RBP13.87□□□□□ -0.19
COL4A1-204ENST00000543140 SMCO1Q147U7 214 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 KIR2DS1Q14954 304 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 CLEC9AQ6UXN8 241 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 LINC00596Q86U02 117 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 LGI3Q8N145 548 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 GAPTQ8N292 157 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 OR52M1Q8NGK5 317 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 OBP2BQ9NPH6 170 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 TAS2R3Q9NYW6 316 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 DNAJB11Q9UBS4 358 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 LRP5LA4QPB2 252 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 J3QW42 95 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 HSD17B6O14756 317 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 KLK10O43240 276 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 TNFSF13O75888 250 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 RPL12P30050 165 aaKnown RBP13.87□□□□□ -0.19
COL4A1-204ENST00000543140 OR8G1Q15617 311 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 FAM76BQ5HYJ3 339 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 TBC1D26Q86UD7 250 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 SLC35G3Q8N808 338 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 IL1F10Q8WWZ1 152 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 SPEF1Q9Y4P9 236 aa13.87□□□□□ -0.19
COL4A1-204ENST00000543140 AHRRA9YTQ3 701 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 K7EM74 188 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 K7EPK0 472 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 CNOT4O95628 575 aaKnown RBP13.86□□□□□ -0.19
COL4A1-204ENST00000543140 IGKV3-15P01624 115 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 ZP3P21754 424 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 IL13RA2Q14627 380 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 SRSF7Q16629 238 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL4A1-204ENST00000543140 TMEM268Q5VZI3 342 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 Q6P435 159 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 PRR18Q8N4B5 295 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 FAM71E2Q8N5Q1 922 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 SPERTQ8NA61 448 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 UBALD1Q8TB05 177 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms