RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 LPLP06858 475 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 CGB3P0DN86 165 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 CGB7P0DN87 165 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 MNDAP41218 407 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 OR3A4PP47883 348 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 RBM39Q14498 530 aaKnown RBP13.42□□□□□ -0.26
CPSF1-207ENST00000531727 PAN3Q58A45 887 aaKnown RBP13.42□□□□□ -0.26
CPSF1-207ENST00000531727 TCTEX1D4Q5JR98 221 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 UTF1Q5T230 341 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 LPCAT4Q643R3 524 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 ZNF529Q6P280 563 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 WFDC9Q8NEX5 89 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 OR52I1Q8NGK6 324 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 OR9G1Q8NH87 305 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 HAVCR2Q8TDQ0 301 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 SGCDQ92629 289 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 KIRREL1Q96J84 757 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 NR1H4Q96RI1 486 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-207ENST00000531727 NCOR1P1Q9H4R4 102 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 MRPS18AQ9NVS2 196 aaKnown RBP13.42□□□□□ -0.26
CPSF1-207ENST00000531727 KIF25Q9UIL4 384 aa13.42□□□□□ -0.26
CPSF1-207ENST00000531727 TRAV24A0A0B4J272 114 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 TCRBV4S1A1TA0A5B7 111 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 AMY1AP04745 511 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 AMY2AP04746 511 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 PF4V1P10720 104 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 CD33P20138 364 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 RAB3AP20336 220 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 NFYBP25208 207 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 GLP1RP43220 463 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 IL13RA2Q14627 380 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 ZSCAN26Q16670 478 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 C10orf67Q8IYJ2 551 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 ZNF565Q8N9K5 539 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 CNIH3Q8TBE1 160 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 MRAPQ8TCY5 172 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 GPER1Q99527 375 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 SLC29A1Q99808 456 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 AURKAIP1Q9NWT8 199 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-207ENST00000531727 CALYQ9NYX4 217 aa13.41□□□□□ -0.26
CPSF1-207ENST00000531727 RPL36Q9Y3U8 105 aaKnown RBP13.41□□□□□ -0.26
CPSF1-207ENST00000531727 TSSC4Q9Y5U2 329 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-207ENST00000531727 MEIKINA0A087WXM9 373 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 LOC100130705A0A1B0GUX0 176 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 SH2D7A6NKC9 451 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-207ENST00000531727 M0QZK8 103 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 GABRPO00591 440 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 MAGEB3O15480 346 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 C21orf33P30042 268 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-207ENST00000531727 KLHL22Q53GT1 634 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 CCDC121Q6ZUS5 278 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 SATL1Q86VE3 508 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 OR51A2Q8NGJ7 313 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 OR13A1Q8NGR1 328 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 TNFAIP8L1Q8WVP5 186 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 RGP1Q92546 391 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-207ENST00000531727 MYDGFQ969H8 173 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 BARHL1Q9BZE3 327 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 LINC00574Q9H8X3 128 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 PCDHB16Q9NRJ7 776 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 FAM118AQ9NWS6 357 aa13.4□□□□□ -0.26
CPSF1-207ENST00000531727 AMMECR1Q9Y4X0 333 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-207ENST00000531727 J3QR06 171 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 IL1AP01583 271 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 FAM106CPP0CH98 169 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 LIMS3P0CW19 117 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 LIMS4P0CW20 117 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 IGLL1P15814 213 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 GTF2A1P52655 376 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-207ENST00000531727 LOXL3P58215 753 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 PAX5Q02548 391 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 RSU1Q15404 277 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 FOXB2Q5VYV0 432 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 Q8NFD4 153 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 OR4X2Q8NGF9 303 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 APH1BQ8WW43 257 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 TOMM40LQ969M1 308 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 RPEQ96AT9 228 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 JAM3Q9BX67 310 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 TAS2R4Q9NYW5 299 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 IDI2-AS1Q9NZ38 188 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 MOB4Q9Y3A3 225 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 HSPE1-MOB4S4R3N1 261 aa13.39□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A18PA6NE21 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A16PA6NEW6 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A20PA6NIJ5 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A9PA6NNJ1 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A12PA8MX19 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A5PA8MXJ8 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 NPIPB11E5RHQ5 1161 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A15PP0C7V4 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A13PP0C7W8 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A14PP0C7W9 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 FAM90A24PP0C7X0 464 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 SOX2P48431 317 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 KCNJ3P48549 501 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 PIGYQ3MUY2 71 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 C9orf152Q5JTZ5 239 aa13.38□□□□□ -0.27
CPSF1-207ENST00000531727 RSBN1Q5VWQ0 802 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-207ENST00000531727 RPL22L1Q6P5R6 122 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms