RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 IFT22Q9H7X7 185 aa11.36□□□□□ -0.59
CD44-224ENST00000526669 ZMAT3Q9HA38 289 aaKnown RBP11.36□□□□□ -0.59
CD44-224ENST00000526669 PLEKHJ1Q9NW61 149 aa11.36□□□□□ -0.59
CD44-224ENST00000526669 LOC105371242A0A075B767 164 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 TRAV39A0A0B4J263 110 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 A8MXK9 166 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 MCRIP1C9JLW8 97 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 RAB27BO00194 218 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 MGST3O14880 152 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 TMEM127O75204 238 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 FOXH1O75593 365 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 GNB3P16520 340 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 ELK1P19419 428 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 CDK2P24941 298 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 GLIPR1P48060 266 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 NPY4RP50391 375 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 CNPY1Q3B7I2 92 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 PLAC9Q5JTB6 97 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 KRBOX4Q5JUW0 171 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 LAX1Q8IWV1 398 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 OR5D13Q8NGL4 314 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 MSI2Q96DH6 328 aaKnown RBP11.35□□□□□ -0.59
CD44-224ENST00000526669 HDHD3Q9BSH5 251 aaPredicted RBP11.35□□□□□ -0.59
CD44-224ENST00000526669 FAAP24Q9BTP7 215 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 FAM234AQ9H0X4 552 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 MIXL1Q9H2W2 232 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 SPACA1Q9HBV2 294 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 C19orf12Q9NSK7 152 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 ETAA1Q9NY74 926 aa11.35□□□□□ -0.59
CD44-224ENST00000526669 ELF5Q9UKW6 265 aaPredicted RBP11.35□□□□□ -0.59
CD44-224ENST00000526669 A0A1W2PQ09 198 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 GZMKP49863 264 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 DYNC1I2Q13409 638 aaKnown RBP11.34□□□□□ -0.59
CD44-224ENST00000526669 RSBN1Q5VWQ0 802 aaPredicted RBP11.34□□□□□ -0.59
CD44-224ENST00000526669 SPNS3Q6ZMD2 512 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 LINC01356Q8N9X3 169 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 CCDC107Q8WV48 283 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 PHF21AQ96BD5 680 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 RAB3CQ96E17 227 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 NUDT16L1Q9BRJ7 211 aaKnown RBP11.34□□□□□ -0.59
CD44-224ENST00000526669 NXF2Q9GZY0 626 aaKnown RBP11.34□□□□□ -0.59
CD44-224ENST00000526669 MMP26Q9NRE1 261 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 AK3Q9UIJ7 227 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 KIF25Q9UIL4 384 aa11.34□□□□□ -0.59
CD44-224ENST00000526669 TRAV18A0A075B6X5 111 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 B4DSR2 109 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 TGFAP01135 160 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 MSMBP08118 114 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 PTHLHP12272 177 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 HIST1H1DP16402 221 aaKnown RBP11.33□□□□□ -0.6
CD44-224ENST00000526669 GLP1RP43220 463 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 P2RX3P56373 397 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 RPL31P62899 125 aaKnown RBP11.33□□□□□ -0.6
CD44-224ENST00000526669 RBM39Q14498 530 aaKnown RBP11.33□□□□□ -0.6
CD44-224ENST00000526669 ZNF273Q14593 569 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 FAM189A2Q15884 450 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 CDNFQ49AH0 187 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 CYB5R2Q6BCY4 276 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 OR4K15Q8NH41 348 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 RAB40AQ8WXH6 277 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 S100A16Q96FQ6 103 aaKnown RBP11.33□□□□□ -0.6
CD44-224ENST00000526669 C1orf159Q96HA4 380 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 C18orf12Q96KH6 178 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 SMR3AQ99954 134 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 ABCG5Q9H222 651 aa11.33□□□□□ -0.6
CD44-224ENST00000526669 RPUSD1Q9UJJ7 312 aaKnown RBP11.33□□□□□ -0.6
CD44-224ENST00000526669 MEIKINA0A087WXM9 373 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 PPIAL4CA0A0B4J2A2 164 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 IGHV2-70DA0A0C4DH43 119 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 TMEM30CPA0ZSE6 113 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 ODAMA1E959 279 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 TMEM235A6NFC5 223 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 MFNGO00587 321 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 APOA1P02647 267 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 CSN2P05814 226 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 INHBBP09529 407 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 PPIAL4GP0DN37 164 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 CD99P14209 185 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 CCL3L1P16619 93 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 KCNJ3P48549 501 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 TMEM69Q5SWH9 247 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 CD276Q5ZPR3 534 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 TCF23Q7RTU1 214 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 C5orf24Q7Z6I8 188 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 TRAPPC6BQ86SZ2 158 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 UBALD1Q8TB05 177 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 SETD6Q8TBK2 473 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 GCDHQ92947 438 aaPredicted RBP11.32□□□□□ -0.6
CD44-224ENST00000526669 POM121Q96HA1 1249 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 TMUB1Q9BVT8 246 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 CHMP1AQ9HD42 196 aaPredicted RBP11.32□□□□□ -0.6
CD44-224ENST00000526669 DIABLOQ9NR28 239 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 HIF1ANQ9NWT6 349 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 ONECUT1Q9UBC0 465 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 EXTL2Q9UBQ6 330 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 HSF4Q9ULV5 492 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 KCNK7Q9Y2U2 307 aa11.32□□□□□ -0.6
CD44-224ENST00000526669 H3BUI4 141 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 ENSAO43768 121 aaKnown RBP11.31□□□□□ -0.6
CD44-224ENST00000526669 SCGNO76038 276 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms