RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	SSX6	Q7RTT6	188 aa		13.85	□□□□□ -0.19
NUP50-218	ENST00000493456	BCDIN3D	Q7Z5W3	292 aa	Known RBP	13.85	□□□□□ -0.19
NUP50-218	ENST00000493456	TGIF2LX	Q8IUE1	241 aa		13.85	□□□□□ -0.19
NUP50-218	ENST00000493456	GID4	Q8IVV7	300 aa		13.85	□□□□□ -0.19
NUP50-218	ENST00000493456	ZNF565	Q8N9K5	539 aa		13.85	□□□□□ -0.19
NUP50-218	ENST00000493456	METTL15	A6NJ78	407 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456		B2RBV5	119 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	SLC33A1	O00400	549 aa	Predicted RBP	13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	RRP9	O43818	475 aa	Known RBP	13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	SULT1C4	O75897	302 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	ATF1	P18846	271 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	GLP1R	P43220	463 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	EBI3	Q14213	229 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	TMEM163	Q8TC26	289 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	CANT1	Q8WVQ1	401 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	C4orf3	Q8WVX3	66 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	CCDC124	Q96CT7	223 aa	Known RBP	13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	ADAT3	Q96EY9	351 aa	Predicted RBP	13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	OPALIN	Q96PE5	141 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	ABCG5	Q9H222	651 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	PPIL3	Q9H2H8	161 aa	Known RBP	13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	LINC00574	Q9H8X3	128 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	LIN7C	Q9NUP9	197 aa	Known RBP	13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	ING3	Q9NXR8	418 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	CALY	Q9NYX4	217 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	ARL2BP	Q9Y2Y0	163 aa		13.84	□□□□□ -0.19
NUP50-218	ENST00000493456	IGKV1-12	A0A0C4DH73	117 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	AQP12B	A6NM10	295 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	LINC01548	A6NM66	108 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	LY86	O95711	162 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	IL1A	P01583	271 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	IGKV1D-12	P01611	117 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	CGB3	P0DN86	165 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	CGB7	P0DN87	165 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	SCN1B	Q07699	218 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456		Q6P435	159 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	SLC16A12	Q6ZSM3	486 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	SBSPON	Q8IVN8	264 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	AQP12A	Q8IXF9	295 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	PRSS35	Q8N3Z0	413 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	TBX5	Q99593	518 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	NCOR1P1	Q9H4R4	102 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	IDI2-AS1	Q9NZ38	188 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	PSG11	Q9UQ72	335 aa		13.83	□□□□□ -0.2
NUP50-218	ENST00000493456	HYDIN	Q4G0P3	5121 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456		A0A1W2PQL4	384 aa	Predicted RBP	13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	NCBP2L	A6PVI3	153 aa	Known RBP	13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	MPZL2	O60487	215 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	FAM107A	O95990	144 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	OR2T7	P0C7T2	308 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	OCM2	P0CE71	109 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	OCM	P0CE72	109 aa	Predicted RBP	13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	ZNF20	P17024	532 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	C21orf33	P30042	268 aa	Predicted RBP	13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	EFNB1	P98172	346 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	ZNF816	Q0VGE8	651 aa	Predicted RBP	13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	DIAPH2-AS1	Q14236	149 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	IZUMO1	Q8IYV9	350 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	SAXO1	Q8IYX7	474 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	TCEANC	Q8N8B7	351 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	OR51T1	Q8NGJ9	327 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	OR10X1	Q8NGY0	326 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	LEAP2	Q969E1	77 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	RFT1	Q96AA3	541 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	NRBF2	Q96F24	287 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	OSBPL10	Q9BXB5	764 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	ZMAT4	Q9H898	229 aa		13.82	□□□□□ -0.2
NUP50-218	ENST00000493456	WARS2	Q9UGM6	360 aa	Known RBP	13.82	□□□□□ -0.2
NUP50-218	ENST00000493456		M0R129	80 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	HSD17B6	O14756	317 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	DEGS1	O15121	323 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	IGHV3-7	P01780	117 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	IGHG4	P01861	327 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	GNG10	P50151	68 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	FAM27D1	Q5T7N8	215 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	TMEM244	Q5VVB8	128 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456		Q8N6K4	173 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456		Q8N9W7	124 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	OR10A7	Q8NGE5	316 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	OR13A1	Q8NGR1	328 aa		13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	EAF1	Q96JC9	268 aa	Predicted RBP	13.81	□□□□□ -0.2
NUP50-218	ENST00000493456	MEIKIN	A0A087WXM9	373 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	NPIPB11	E5RHQ5	1161 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	MT-ND2	P03891	347 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	OR8U8	P0C7N1	319 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	VDAC1	P21796	283 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	KIR3DL2	P43630	455 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	CFHR3	Q02985	330 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	FAHD1	Q6P587	224 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	FAM220A	Q7Z4H9	259 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	MOB3B	Q86TA1	216 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	RDH10	Q8IZV5	341 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	OR11H1	Q8NG94	326 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	OR2T10	Q8NGZ9	312 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	FGGY	Q96C11	551 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	CITED4	Q96RK1	184 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	MBOAT4	Q96T53	435 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	NEK6	Q9HC98	313 aa		13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	GAR1	Q9NY12	217 aa	Known RBP	13.8	□□□□□ -0.2
NUP50-218	ENST00000493456	IGHV1-3	A0A0C4DH29	117 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 53 ms