RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ARG1P05089 322 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 IGHV1-8P0DP01 117 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 PRKACAP17612 351 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 GABRA5P31644 462 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 NPBWR2P48146 333 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 GBX2P52951 348 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 SNU13P55769 128 aaKnown RBP5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 GRK1Q15835 563 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 ZSCAN26Q16670 478 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 KLHL22Q53GT1 634 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 C11orf88Q6PI97 169 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 SERPINA12Q8IW75 414 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 SAXO1Q8IYX7 474 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 PARP16Q8N5Y8 322 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF555Q8NEP9 628 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 OR5D14Q8NGL3 314 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 OR4C13Q8NGP0 309 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 OR10AC1Q8NH08 325 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 OR5AK2Q8NH90 309 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 CHAC2Q8WUX2 184 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 STMN2Q93045 179 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 RFT1Q96AA3 541 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 RDH12Q96NR8 316 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 SLC29A1Q99808 456 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 CHST6Q9GZX3 395 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 RANBP3Q9H6Z4 567 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 ISG20L2Q9H9L3 353 aaKnown RBP5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 TCF7L1Q9HCS4 588 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 HMG20AQ9NP66 347 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 MRPS18AQ9NVS2 196 aaKnown RBP5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 FAM118AQ9NWS6 357 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 SMPD3Q9NY59 655 aaPredicted RBP5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 IL36RNQ9UBH0 155 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 TBL2Q9Y4P3 447 aaKnown RBP5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 LINC00312Q9Y6C7 94 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 IGHV2-26A0A0B4J1V2 119 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 IGKV1-12A0A0C4DH73 117 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 IRGMA1A4Y4 181 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 MEX3AA1L020 520 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 FUOMA2VDF0 154 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 FAM90A8PA6NJQ4 464 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 ODF3BA8MYP8 253 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 MAGEB3O15480 346 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 SULT1B1O43704 296 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 ZFPL1O95159 310 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR2H2O95918 312 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 IGKV1D-12P01611 117 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 HCKP08631 526 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 CALCBP10092 127 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 DUSP1P28562 367 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 ERP29P30040 261 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR3A1P47881 315 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 P2RX3P56373 397 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 KRTAP10-3P60369 221 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 DYNC1I2Q13409 638 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 LY6EQ16553 131 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 LCE1AQ5T7P2 110 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 LPCAT4Q643R3 524 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF626Q68DY1 528 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 ASPHD2Q6ICH7 369 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 SLC35E4Q6ICL7 350 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 TCF23Q7RTU1 214 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 LHFPL4Q7Z7J7 247 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 TRAPPC6BQ86SZ2 158 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 TPRX1Q8N7U7 411 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 CHST4Q8NCG5 386 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR4S1Q8NGB4 309 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR11H6Q8NGC7 330 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR8H1Q8NGG4 311 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR52N4Q8NGI2 321 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR52I1Q8NGK6 324 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR5D18Q8NGL1 313 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 OR13C9Q8NGT0 318 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 RPS4Y2Q8TD47 263 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 TSEN15Q8WW01 171 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 APH1BQ8WW43 257 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 MALSU1Q96EH3 234 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 CPNE2Q96FN4 548 aaPredicted RBP5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 SPACA5Q96QH8 159 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 GPHA2Q96T91 129 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 PDCD1LG2Q9BQ51 273 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF649Q9BS31 505 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 CDCA4Q9BXL8 241 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 NPFFR1Q9GZQ6 430 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 MMP27Q9H306 513 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 GAL3ST2Q9H3Q3 398 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 AMBNQ9NP70 447 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 EXOSC4Q9NPD3 245 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 ABCB10Q9NRK6 738 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 DHDHQ9UQ10 334 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 GSTK1Q9Y2Q3 226 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 UBE2J1Q9Y385 318 aaPredicted RBP5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 SESN1Q9Y6P5 492 aa5.49□□□□□ -1.53
CCDC88A-213ENST00000476903 TRGV10A0A0A0MS01 117 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 A0A1W2PRX2 142 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 E9PI62 339 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 SIRPB1O00241 398 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 CASQ2O14958 399 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 CSN2P05814 226 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 LIMS3P0CW19 117 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms