RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 KRTAP5-5Q701N2 237 aaPredicted RBP2.56□□□□□ -2
VPS13A-210ENST00000471439 PGAP1Q75T13 922 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 DHDDSQ86SQ9 333 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 RDH10Q8IZV5 341 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 KIR2DL5AQ8N109 375 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 OSR2Q8N2R0 312 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 CCDC71LQ8N9Z2 235 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 OR4K14Q8NGD5 310 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 OR8J1Q8NGP2 316 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 KIR2DL5BQ8NHK3 375 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 MAGEE2Q8TD90 523 aaPredicted RBP2.56□□□□□ -2
VPS13A-210ENST00000471439 COQ2Q96H96 371 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 TMEM101Q96IK0 257 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 PELOQ9BRX2 385 aaKnown RBP2.56□□□□□ -2
VPS13A-210ENST00000471439 TMEM43Q9BTV4 400 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 ZNF717Q9BY31 904 aaPredicted RBP2.56□□□□□ -2
VPS13A-210ENST00000471439 TBL1XR1Q9BZK7 514 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 VCX2Q9H322 139 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 YY1AP1Q9H869 796 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 POLE4Q9NR33 117 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 DCDC2Q9UHG0 476 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 MUC12Q9UKN1 5478 aa2.56□□□□□ -2
VPS13A-210ENST00000471439 TRAV26-1A0A087WT03 109 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 BTNL10A8MVZ5 291 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 GPR171O14626 319 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 ZNF208O43345 1280 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 TTC4O95801 387 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 IGLV1-47P01700 117 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 CALB1P05937 261 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 SLC35E2BP0CK96 405 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 CTRLP40313 264 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 GSSP48637 474 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 CCT3P49368 545 aaKnown RBP2.55□□□□□ -2
VPS13A-210ENST00000471439 HNRNPA3P51991 378 aaKnown RBP2.55□□□□□ -2
VPS13A-210ENST00000471439 ATP1B3P54709 279 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 PKNOX1P55347 436 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 PNOCQ13519 176 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 ARL6IP1Q15041 203 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 BOLA3Q53S33 107 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 ACSBG2Q5FVE4 666 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 PAGE3Q5JUK9 113 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 C1orf100Q5SVJ3 147 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 C1orf146Q5VVC0 180 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 DUPD1Q68J44 220 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 PTRHD1Q6GMV3 140 aaKnown RBP2.55□□□□□ -2
VPS13A-210ENST00000471439 OR52E8Q6IFG1 317 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 MBOAT1Q6ZNC8 495 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 FTMTQ8N4E7 242 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 OR7G1Q8NGA0 311 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 ANKRD7Q92527 254 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 CMTM7Q96FZ5 175 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 PAGE5Q96GU1 130 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 SNF8Q96H20 258 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 OXGR1Q96P68 337 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 OR4K3Q96R72 315 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 NAT9Q9BTE0 207 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 RBKSQ9H477 322 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 AIG1Q9NVV5 245 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 PRO0461Q9UI25 63 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 PRPF19Q9UMS4 504 aaKnown RBP2.55□□□□□ -2
VPS13A-210ENST00000471439 KPTNQ9Y664 436 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 CDH10Q9Y6N8 788 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 V9GY05 133 aa2.55□□□□□ -2
VPS13A-210ENST00000471439 TCRBV9S1A1TA0A576 114 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 GJE1A6NN92 205 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 H3BQV1 296 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 NBR2O15453 112 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 PDYNP01213 254 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 GABRR1P24046 479 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 ELK4P28324 431 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 RPL13AP40429 203 aaKnown RBP2.54□□□□□ -2
VPS13A-210ENST00000471439 GRIA1P42261 906 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 UBE2E1P51965 193 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 SELENOTP62341 195 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 FGL1Q08830 312 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 FOXF1Q12946 379 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 DUSP7Q16829 419 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 ZNF404Q494X3 552 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 ATP6AP1LQ52LC2 224 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 TMEM255AQ5JRV8 349 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 FAM201AQ5SY85 155 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 AGTRAPQ6RW13 159 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 THOC6Q86W42 341 aaKnown RBP2.54□□□□□ -2
VPS13A-210ENST00000471439 PHF13Q86YI8 300 aaPredicted RBP2.54□□□□□ -2
VPS13A-210ENST00000471439 ZNF679Q8IYX0 411 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 ZCCHC7Q8N3Z6 543 aaKnown RBP2.54□□□□□ -2
VPS13A-210ENST00000471439 PQLC3Q8N755 202 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 ACOT4Q8N9L9 421 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 NKAPP1Q8N9T2 125 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 ARPC1AQ92747 370 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 TNFRSF14Q92956 283 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 LRRC39Q96DD0 335 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 AURKBQ96GD4 344 aaPredicted RBP2.54□□□□□ -2
VPS13A-210ENST00000471439 SLC41A3Q96GZ6 507 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 ZNF75AQ96N20 296 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 LINC00167Q96N53 147 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 TSNARE1Q96NA8 513 aa2.54□□□□□ -2
VPS13A-210ENST00000471439 ZNF317Q96PQ6 595 aaPredicted RBP2.54□□□□□ -2
VPS13A-210ENST00000471439 POLR2J2Q9GZM3 115 aaKnown RBP2.54□□□□□ -2
VPS13A-210ENST00000471439 POLR2J3Q9H1A7 115 aaKnown RBP2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms