RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 AK7Q96M32 723 aa14.52□□□□□ -0.08
LIG1-221ENST00000613670 IFIT3O14879 490 aaKnown RBP14.52□□□□□ -0.09
LIG1-221ENST00000613670 LMAN1P49257 510 aa14.52□□□□□ -0.09
LIG1-221ENST00000613670 SART3Q15020 963 aaKnown RBP14.52□□□□□ -0.09
LIG1-221ENST00000613670 CABLES1Q8TDN4 633 aa14.52□□□□□ -0.09
LIG1-221ENST00000613670 RNF216Q9NWF9 866 aaPredicted RBP14.52□□□□□ -0.09
LIG1-221ENST00000613670 PDIA3P30101 505 aaKnown RBP14.51□□□□□ -0.09
LIG1-221ENST00000613670 IL15P40933 162 aaPredicted RBP14.51□□□□□ -0.09
LIG1-221ENST00000613670 KRT28Q7Z3Y7 464 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 PHKBQ93100 1093 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 LZTFL1Q9NQ48 299 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 IGKV5-2P06315 115 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 HSPD1P10809 573 aaKnown RBP14.51□□□□□ -0.09
LIG1-221ENST00000613670 MTX1Q13505 466 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 KMT5BQ4FZB7 885 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 ADALQ6DHV7 355 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 TDO2P48775 406 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 EVA1CP58658 441 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 MYL5Q02045 173 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 TMEM67Q5HYA8 995 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 MYL10Q9BUA6 226 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 STRN4Q9NRL3 753 aa14.51□□□□□ -0.09
LIG1-221ENST00000613670 STX17P56962 302 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 IFIT5Q13325 482 aaKnown RBP14.5□□□□□ -0.09
LIG1-221ENST00000613670 MYSM1Q5VVJ2 828 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 LEKR1Q6ZMV7 388 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 TOM1L2Q6ZVM7 507 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 ANKRD7Q92527 254 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 DDX41Q9UJV9 622 aaKnown RBP14.5□□□□□ -0.09
LIG1-221ENST00000613670 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.5□□□□□ -0.094e-7■■□□□ 14.5
LIG1-221ENST00000613670 SLC12A7Q9Y666 1083 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.5□□□□□ -0.09
LIG1-221ENST00000613670 ARFGAP3Q9NP61 516 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 PUF60Q9UHX1 559 aaKnown RBP14.5□□□□□ -0.09
LIG1-221ENST00000613670 DACH1Q9UI36 760 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 PFKFB1P16118 471 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 AFMP43652 599 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 PNOCQ13519 176 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 LDHAL6AQ6ZMR3 332 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 ST7Q9NRC1 585 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 HELLSQ9NRZ9 838 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 AKAP2Q9Y2D5 859 aa14.5□□□□□ -0.09
LIG1-221ENST00000613670 VGLL3A8MV65 326 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 IPO7O95373 1038 aaKnown RBP14.49□□□□□ -0.09
LIG1-221ENST00000613670 ATP1A3P13637 1013 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 ATF3P18847 181 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 SLC9C2Q5TAH2 1124 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 PPP1R13BQ96KQ4 1090 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 NAPBQ9H115 298 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 ATL3Q6DD88 541 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 SMARCE1Q969G3 411 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 HAUS7Q99871 368 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 CWC15Q9P013 229 aaKnown RBP14.49□□□□□ -0.09
LIG1-221ENST00000613670 OVOS2A0A0J9YW53 1432 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 OVOS2Q6IE36 1432 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 ZBTB43O43298 467 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 ADD1P35611 737 aaKnown RBP14.49□□□□□ -0.09
LIG1-221ENST00000613670 NLRP12P59046 1061 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 JAKMIP3Q5VZ66 844 aa14.49□□□□□ -0.09
LIG1-221ENST00000613670 KIF5CO60282 957 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 PTPN12Q05209 780 aaKnown RBP14.48□□□□□ -0.09
LIG1-221ENST00000613670 IQCB1Q15051 598 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 LRRC24Q50LG9 513 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 KIF6Q6ZMV9 814 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 BRAPQ7Z569 592 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 TRMT44Q8IYL2 757 aaKnown RBP14.48□□□□□ -0.09
LIG1-221ENST00000613670 IMPACTQ9P2X3 320 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 ETF1P62495 437 aaKnown RBP14.48□□□□□ -0.09
LIG1-221ENST00000613670 COPRSQ9NQ92 184 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 DIP2CQ9Y2E4 1556 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 MINDY4BA8MYZ0 360 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 CTIFO43310 598 aaKnown RBP14.48□□□□□ -0.09
LIG1-221ENST00000613670 CDC25BP30305 580 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 FAM193AP78312 1265 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 SSRP1Q08945 709 aaKnown RBP14.48□□□□□ -0.09
LIG1-221ENST00000613670 CAGE1Q8TC20 777 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 CLIC6Q96NY7 704 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 TCHHQ07283 1943 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 IFT172Q9UG01 1749 aa14.48□□□□□ -0.09
LIG1-221ENST00000613670 BAG1Q99933 345 aaPredicted RBP14.47□□□□□ -0.09
LIG1-221ENST00000613670 B4E1Z4 1266 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 PHACTR2O75167 634 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 SEC31AO94979 1220 aaKnown RBP14.47□□□□□ -0.09
LIG1-221ENST00000613670 A1BGP04217 495 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 XBP1P17861 261 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 ADKP55263 362 aaKnown RBP14.47□□□□□ -0.09
LIG1-221ENST00000613670 STOX1Q6ZVD7 989 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 DESI2Q9BSY9 194 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 EYA2O00167 538 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 ZNF827Q17R98 1081 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 AIFM3Q96NN9 605 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 USP31Q70CQ4 1352 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 CDC42BPGQ6DT37 1551 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 ERLIN1O75477 346 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 ZKSCAN3Q9BRR0 538 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 UBAC1Q9BSL1 405 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 FANCLQ9NW38 375 aa14.47□□□□□ -0.09
LIG1-221ENST00000613670 NEK11Q8NG66 645 aa14.46□□□□□ -0.09
LIG1-221ENST00000613670 SLC52A2Q9HAB3 445 aa14.46□□□□□ -0.09
LIG1-221ENST00000613670 KIF20BQ96Q89 1820 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 225 ms