RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ECEL1O95672 775 aa12□□□□□ -0.49
LIG1-220ENST00000601091 ATP2B1P20020 1258 aa12□□□□□ -0.49
LIG1-220ENST00000601091 ADCK5Q3MIX3 580 aa12□□□□□ -0.49
LIG1-220ENST00000601091 RRP12Q5JTH9 1297 aaKnown RBP12□□□□□ -0.49
LIG1-220ENST00000601091 C10orf67Q8IYJ2 551 aa12□□□□□ -0.49
LIG1-220ENST00000601091 PAG1Q9NWQ8 432 aa12□□□□□ -0.49
LIG1-220ENST00000601091 TSPOAP1O95153 1857 aa12□□□□□ -0.49
LIG1-220ENST00000601091 STARD3NLO95772 234 aa12□□□□□ -0.49
LIG1-220ENST00000601091 XBP1P17861 261 aa12□□□□□ -0.49
LIG1-220ENST00000601091 LUZP1Q86V48 1076 aa12□□□□□ -0.49
LIG1-220ENST00000601091 TRIM22Q8IYM9 498 aa12□□□□□ -0.49
LIG1-220ENST00000601091 CCAR2Q8N163 923 aaKnown RBP12□□□□□ -0.49
LIG1-220ENST00000601091 USP16Q9Y5T5 823 aa12□□□□□ -0.49
LIG1-220ENST00000601091 CDC42BPGQ6DT37 1551 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 GOLGA8BA8MQT2 603 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 ANKRD23Q86SG2 305 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 VPS37DQ86XT2 251 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 MAP4K1Q92918 833 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 ORC3Q9UBD5 711 aaPredicted RBP11.99□□□□□ -0.49
LIG1-220ENST00000601091 HAND2P61296 217 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 CDC37L1Q7L3B6 337 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 PDILTQ8N807 584 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 DBNDD2Q9BQY9 259 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 TPCN1Q9ULQ1 816 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 TMEM131LA2VDJ0 1609 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 PROSER3Q2NL68 480 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 NACAP1Q9BZK3 213 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 SLC52A2Q9HAB3 445 aa11.99□□□□□ -0.49
LIG1-220ENST00000601091 ARGLU1Q9NWB6 273 aaPredicted RBP11.99□□□□□ -0.49
LIG1-220ENST00000601091 CCDC69A6NI79 296 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 SETSIPP0DME0 302 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 FEZ2Q9UHY8 353 aaPredicted RBP11.98□□□□□ -0.49
LIG1-220ENST00000601091 A0A0D9SFI3 127 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 NEURL1BA8MQ27 555 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 POLR3DP05423 398 aaPredicted RBP11.98□□□□□ -0.49
LIG1-220ENST00000601091 ZFYP08048 801 aaPredicted RBP11.98□□□□□ -0.49
LIG1-220ENST00000601091 ATP5JP18859 108 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 C19orf44Q9H6X5 657 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 PPME1Q9Y570 386 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 PREX1Q8TCU6 1659 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 KIF2AO00139 706 aaPredicted RBP11.98□□□□□ -0.49
LIG1-220ENST00000601091 SLC3A2P08195 630 aaKnown RBP11.98□□□□□ -0.49
LIG1-220ENST00000601091 SFPQP23246 707 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIG1-220ENST00000601091 PSMD2Q13200 908 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 ATP2B3Q16720 1220 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 LEO1Q8WVC0 666 aaPredicted RBP11.98□□□□□ -0.49
LIG1-220ENST00000601091 AIDAQ96BJ3 306 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 ZNF496Q96IT1 587 aaPredicted RBP11.98□□□□□ -0.49
LIG1-220ENST00000601091 OVOS2A0A0J9YW53 1432 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 OVOS2Q6IE36 1432 aa11.98□□□□□ -0.49
LIG1-220ENST00000601091 CBFA2T2O43439 604 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 PTGS1P23219 599 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 APOBRQ0VD83 1088 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 E2F4Q16254 413 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 CCDC129Q6ZRS4 1044 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 TMOD3Q9NYL9 352 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 MAP2P11137 1827 aaKnown RBP11.97□□□□□ -0.49
LIG1-220ENST00000601091 MAP2K2P36507 400 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 TIMM10P62072 90 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 NCOA7Q8NI08 942 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 KIF18AQ8NI77 898 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 EDC3Q96F86 508 aaKnown RBP11.97□□□□□ -0.49
LIG1-220ENST00000601091 MPHOSPH8Q99549 860 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 PTPDC1A2A3K4 754 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 TTC19Q6DKK2 380 aaPredicted RBP11.97□□□□□ -0.49
LIG1-220ENST00000601091 LDHAL6AQ6ZMR3 332 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 KRBA2Q6ZNG9 492 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 ANKRD20A12PQ8NF67 263 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 PDLIM2Q96JY6 352 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 FAM210AQ96ND0 272 aa11.97□□□□□ -0.49
LIG1-220ENST00000601091 GSDMDP57764 484 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 NAA30Q147X3 362 aaPredicted RBP11.96□□□□□ -0.49
LIG1-220ENST00000601091 TSR1Q2NL82 804 aaKnown RBP11.96□□□□□ -0.49
LIG1-220ENST00000601091 WDR78Q5VTH9 848 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 KBTBD3Q8NAB2 608 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 PLBD2Q8NHP8 589 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 LLPHQ9BRT6 129 aaKnown RBP11.96□□□□□ -0.49
LIG1-220ENST00000601091 KLF18A0A0U1RQI7 1052 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 RNF113AO15541 343 aaKnown RBP11.96□□□□□ -0.49
LIG1-220ENST00000601091 ATP6V1AP38606 617 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 ARHGEF25Q86VW2 580 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 BRMS1Q9HCU9 246 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 HELLSQ9NRZ9 838 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 PAXBP1Q9Y5B6 917 aa11.96□□□□□ -0.49
LIG1-220ENST00000601091 MTX1Q13505 466 aa11.96□□□□□ -0.5
LIG1-220ENST00000601091 ATL3Q6DD88 541 aa11.96□□□□□ -0.5
LIG1-220ENST00000601091 C16orf87Q6PH81 154 aa11.96□□□□□ -0.5
LIG1-220ENST00000601091 TTC6Q86TZ1 520 aa11.96□□□□□ -0.5
LIG1-220ENST00000601091 CADPS2Q86UW7 1296 aa11.96□□□□□ -0.5
LIG1-220ENST00000601091 MRPS27Q92552 414 aaKnown RBP11.96□□□□□ -0.5
LIG1-220ENST00000601091 CFAP100Q494V2 611 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 ZC3H12AQ5D1E8 599 aaKnown RBP11.95□□□□□ -0.5
LIG1-220ENST00000601091 CHST3Q7LGC8 479 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 KCNG4Q8TDN1 519 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 CABLES1Q8TDN4 633 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 WASF1Q92558 559 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 BORCS6Q96GS4 357 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 CLSTN2Q9H4D0 955 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 BCL2L12Q9HB09 334 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 TRMT1Q9NXH9 659 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms