RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 PPP2R3BQ9Y5P8 575 aa22.25■■□□□ 1.15
RETREG3-210ENST00000590541 UNCXA6NJT0 531 aa22.24■■□□□ 1.15
RETREG3-210ENST00000590541 APAF1O14727 1248 aa22.24■■□□□ 1.15
RETREG3-210ENST00000590541 EN2P19622 333 aaPredicted RBP22.24■■□□□ 1.15
RETREG3-210ENST00000590541 CALD1Q05682 793 aaKnown RBP22.24■■□□□ 1.15
RETREG3-210ENST00000590541 NEXNQ0ZGT2 675 aa22.24■■□□□ 1.15
RETREG3-210ENST00000590541 IRS2Q9Y4H2 1338 aa22.24■■□□□ 1.15
RETREG3-210ENST00000590541 BRCA2P51587 3418 aa22.24■■□□□ 1.15
RETREG3-210ENST00000590541 ECM29Q5VYK3 1845 aa22.23■■□□□ 1.15
RETREG3-210ENST00000590541 PTPN18Q99952 460 aa22.23■■□□□ 1.15
RETREG3-210ENST00000590541 PLA2G12BQ9BX93 195 aa22.23■■□□□ 1.15
RETREG3-210ENST00000590541 CLRN2A0PK11 232 aa22.22■■□□□ 1.15
RETREG3-210ENST00000590541 SNAP23O00161 211 aa22.22■■□□□ 1.15
RETREG3-210ENST00000590541 FXR1P51114 621 aaKnown RBP eCLIP22.22■■□□□ 1.15
RETREG3-210ENST00000590541 CHRNDQ07001 517 aa22.22■■□□□ 1.15
RETREG3-210ENST00000590541 NBPF12Q5TAG4 269 aaPredicted RBP22.22■■□□□ 1.15
RETREG3-210ENST00000590541 MPHOSPH8Q99549 860 aa22.22■■□□□ 1.15
RETREG3-210ENST00000590541 CHMP4AQ9BY43 222 aa22.22■■□□□ 1.15
RETREG3-210ENST00000590541 EFCC1Q9HA90 598 aa22.22■■□□□ 1.15
RETREG3-210ENST00000590541 AOX1Q06278 1338 aa22.22■■□□□ 1.15
RETREG3-210ENST00000590541 TESPA1A2RU30 521 aaPredicted RBP22.21■■□□□ 1.15
RETREG3-210ENST00000590541 USP2O75604 605 aaPredicted RBP22.21■■□□□ 1.15
RETREG3-210ENST00000590541 CSF1RP07333 972 aa22.21■■□□□ 1.15
RETREG3-210ENST00000590541 KCNJ4P48050 445 aa22.21■■□□□ 1.15
RETREG3-210ENST00000590541 SUPT20HL1Q3ZLR7 823 aa22.21■■□□□ 1.15
RETREG3-210ENST00000590541 PRMT6Q96LA8 375 aaPredicted RBP22.21■■□□□ 1.15
RETREG3-210ENST00000590541 SPDYE2BA6NHP3 402 aa22.2■■□□□ 1.14
RETREG3-210ENST00000590541 SPDYE6P0CI01 402 aa22.2■■□□□ 1.14
RETREG3-210ENST00000590541 IREB2P48200 963 aaKnown RBP22.2■■□□□ 1.14
RETREG3-210ENST00000590541 CASP7P55210 303 aa22.2■■□□□ 1.14
RETREG3-210ENST00000590541 SP3Q02447 781 aa22.2■■□□□ 1.14
RETREG3-210ENST00000590541 CFAP100Q494V2 611 aa22.2■■□□□ 1.14
RETREG3-210ENST00000590541 OTUD7BQ6GQQ9 843 aa22.2■■□□□ 1.14
RETREG3-210ENST00000590541 KIAA0100Q14667 2235 aaKnown RBP22.19■■□□□ 1.14
RETREG3-210ENST00000590541 F8W031 263 aaPredicted RBP22.19■■□□□ 1.14
RETREG3-210ENST00000590541 C15orf52Q6ZUT6 534 aaKnown RBP22.19■■□□□ 1.14
RETREG3-210ENST00000590541 G2E3Q7L622 706 aa22.19■■□□□ 1.14
RETREG3-210ENST00000590541 VEZTQ9HBM0 779 aa22.19■■□□□ 1.14
RETREG3-210ENST00000590541 MYO1BO43795 1136 aa22.18■■□□□ 1.14
RETREG3-210ENST00000590541 TAF5LO75529 589 aa22.18■■□□□ 1.14
RETREG3-210ENST00000590541 GCKRQ14397 625 aa22.18■■□□□ 1.14
RETREG3-210ENST00000590541 ANKRD13AQ8IZ07 590 aa22.18■■□□□ 1.14
RETREG3-210ENST00000590541 IL1R1P14778 569 aa22.17■■□□□ 1.14
RETREG3-210ENST00000590541 FKBP1AP62942 108 aaKnown RBP22.17■■□□□ 1.14
RETREG3-210ENST00000590541 RASA3Q14644 834 aa22.17■■□□□ 1.14
RETREG3-210ENST00000590541 ZNF333Q96JL9 665 aa22.17■■□□□ 1.14
RETREG3-210ENST00000590541 HELBQ8NG08 1087 aaPredicted RBP22.16■■□□□ 1.14
RETREG3-210ENST00000590541 MS4A4AQ96JQ5 239 aa22.16■■□□□ 1.14
RETREG3-210ENST00000590541 STK31Q9BXU1 1019 aa22.16■■□□□ 1.14
RETREG3-210ENST00000590541 OTOFQ9HC10 1997 aa22.16■■□□□ 1.14
RETREG3-210ENST00000590541 TSR2Q969E8 191 aaKnown RBP22.15■■□□□ 1.14
RETREG3-210ENST00000590541 OPTNQ96CV9 577 aa22.15■■□□□ 1.14
RETREG3-210ENST00000590541 TMEM106CQ9BVX2 250 aa22.15■■□□□ 1.14
RETREG3-210ENST00000590541 ELP3Q9H9T3 547 aa22.15■■□□□ 1.14
RETREG3-210ENST00000590541 COLQQ9Y215 455 aaPredicted RBP22.15■■□□□ 1.14
RETREG3-210ENST00000590541 JAG2Q9Y219 1238 aa22.15■■□□□ 1.14
RETREG3-210ENST00000590541 A0A1B0GUL6 1792 aa22.15■■□□□ 1.14
RETREG3-210ENST00000590541 ZNF316A6NFI3 1004 aaPredicted RBP22.14■■□□□ 1.13
RETREG3-210ENST00000590541 ANKRD18BA2A2Z9 1011 aa22.13■■□□□ 1.13
RETREG3-210ENST00000590541 SLC4A2P04920 1241 aa22.13■■□□□ 1.13
RETREG3-210ENST00000590541 ZNF804AQ7Z570 1209 aa22.13■■□□□ 1.13
RETREG3-210ENST00000590541 PTCH2Q9Y6C5 1203 aa22.13■■□□□ 1.13
RETREG3-210ENST00000590541 RBM5P52756 815 aaKnown RBP eCLIP22.12■■□□□ 1.13
RETREG3-210ENST00000590541 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.12■■□□□ 1.13
RETREG3-210ENST00000590541 CNKSR2Q8WXI2 1034 aa22.12■■□□□ 1.13
RETREG3-210ENST00000590541 BRI3BPQ8WY22 251 aa22.12■■□□□ 1.13
RETREG3-210ENST00000590541 SPDYE2Q495Y8 402 aa22.11■■□□□ 1.13
RETREG3-210ENST00000590541 SLC9C1Q4G0N8 1177 aa22.11■■□□□ 1.13
RETREG3-210ENST00000590541 CDAN1Q8IWY9 1227 aa22.11■■□□□ 1.13
RETREG3-210ENST00000590541 MYH16Q9H6N6 1097 aa22.11■■□□□ 1.13
RETREG3-210ENST00000590541 FOXO4P98177 505 aa22.1■■□□□ 1.13
RETREG3-210ENST00000590541 FLIIQ13045 1269 aa22.1■■□□□ 1.13
RETREG3-210ENST00000590541 TAF1CQ15572 869 aaPredicted RBP22.1■■□□□ 1.13
RETREG3-210ENST00000590541 TWISTNBQ3B726 338 aaPredicted RBP22.1■■□□□ 1.13
RETREG3-210ENST00000590541 NBPF11Q86T75 865 aa22.1■■□□□ 1.13
RETREG3-210ENST00000590541 LINS1Q8NG48 757 aa22.1■■□□□ 1.13
RETREG3-210ENST00000590541 TEPSINQ96N21 525 aa22.1■■□□□ 1.13
RETREG3-210ENST00000590541 ZNF70Q9UC06 446 aaPredicted RBP22.1■■□□□ 1.13
RETREG3-210ENST00000590541 IFIT5Q13325 482 aaKnown RBP22.09■■□□□ 1.13
RETREG3-210ENST00000590541 TNFAIP1Q13829 316 aa22.09■■□□□ 1.13
RETREG3-210ENST00000590541 FAM43AQ8N2R8 423 aa22.09■■□□□ 1.13
RETREG3-210ENST00000590541 DNAAF4Q8WXU2 420 aa22.09■■□□□ 1.13
RETREG3-210ENST00000590541 TDRD3Q9H7E2 651 aaKnown RBP22.09■■□□□ 1.13
RETREG3-210ENST00000590541 ZFYVE28Q9HCC9 887 aa22.09■■□□□ 1.13
RETREG3-210ENST00000590541 CCL15-CCL14A0A0B4J2E2 113 aa22.08■■□□□ 1.13
RETREG3-210ENST00000590541 ARHGEF6Q15052 776 aa22.08■■□□□ 1.13
RETREG3-210ENST00000590541 CCL15Q16663 113 aa22.08■■□□□ 1.13
RETREG3-210ENST00000590541 SLC4A8Q2Y0W8 1093 aa22.08■■□□□ 1.13
RETREG3-210ENST00000590541 FAM205AQ6ZU69 1335 aa22.07■■□□□ 1.12
RETREG3-210ENST00000590541 GTF2A2P52657 109 aa22.07■■□□□ 1.12
RETREG3-210ENST00000590541 VGLL4Q14135 290 aa22.07■■□□□ 1.12
RETREG3-210ENST00000590541 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.07■■□□□ 1.12
RETREG3-210ENST00000590541 SERPINA10Q9UK55 444 aa22.07■■□□□ 1.12
RETREG3-210ENST00000590541 MYCP01106 439 aaPredicted RBP22.06■■□□□ 1.12
RETREG3-210ENST00000590541 FKBP5Q13451 457 aaPredicted RBP22.06■■□□□ 1.12
RETREG3-210ENST00000590541 OTUD5Q96G74 571 aa22.06■■□□□ 1.12
RETREG3-210ENST00000590541 TTF2Q9UNY4 1162 aaKnown RBP22.06■■□□□ 1.12
RETREG3-210ENST00000590541 H0YGN5 161 aa22.05■■□□□ 1.12
RETREG3-210ENST00000590541 ANP32CO43423 234 aa22.05■■□□□ 1.12
RETREG3-210ENST00000590541 MAP3K9P80192 1104 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms