RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 GJB2P29033 226 aa12.3□□□□□ -0.44
VPS25-203ENST00000589520 RPS8P62241 208 aaKnown RBP12.3□□□□□ -0.44
VPS25-203ENST00000589520 PKP1Q13835 747 aa12.3□□□□□ -0.44
VPS25-203ENST00000589520 Q6ZUG5 572 aa12.3□□□□□ -0.44
VPS25-203ENST00000589520 TMEM87AQ8NBN3 555 aa12.3□□□□□ -0.44
VPS25-203ENST00000589520 RGS22Q8NE09 1264 aa12.3□□□□□ -0.44
VPS25-203ENST00000589520 NCOA7Q8NI08 942 aa12.3□□□□□ -0.44
VPS25-203ENST00000589520 ZNF274Q96GC6 653 aaPredicted RBP12.3□□□□□ -0.44
VPS25-203ENST00000589520 DENND2AQ9ULE3 1009 aa12.3□□□□□ -0.44
VPS25-203ENST00000589520 PDS5AQ29RF7 1337 aaKnown RBP12.3□□□□□ -0.44
VPS25-203ENST00000589520 LAMB2P55268 1798 aa12.3□□□□□ -0.44
VPS25-203ENST00000589520 PATL2C9JE40 543 aaKnown RBP12.29□□□□□ -0.44
VPS25-203ENST00000589520 PFKFB2O60825 505 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 IDH1O75874 414 aaKnown RBP12.29□□□□□ -0.44
VPS25-203ENST00000589520 FGAP02671 866 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 PDE6AP16499 860 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 EVCP57679 992 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 HMGN5P82970 282 aaKnown RBP12.29□□□□□ -0.44
VPS25-203ENST00000589520 TRDNQ13061 729 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 LARP1BQ659C4 914 aaKnown RBP12.29□□□□□ -0.44
VPS25-203ENST00000589520 HELBQ8NG08 1087 aaPredicted RBP12.29□□□□□ -0.44
VPS25-203ENST00000589520 GTF3C6Q969F1 213 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 AIDAQ96BJ3 306 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 PUS7LQ9H0K6 701 aaKnown RBP12.29□□□□□ -0.44
VPS25-203ENST00000589520 MINPP1Q9UNW1 487 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 ZNF804BA4D1E1 1349 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 CARMIL3Q8ND23 1372 aa12.29□□□□□ -0.44
VPS25-203ENST00000589520 FSD2A1L4K1 749 aa12.28□□□□□ -0.44
VPS25-203ENST00000589520 DHX16O60231 1041 aaKnown RBP12.28□□□□□ -0.44
VPS25-203ENST00000589520 PRPF40AO75400 957 aaKnown RBP12.28□□□□□ -0.44
VPS25-203ENST00000589520 F13A1P00488 732 aa12.28□□□□□ -0.44
VPS25-203ENST00000589520 MCM5P33992 734 aa12.28□□□□□ -0.44
VPS25-203ENST00000589520 MRE11P49959 708 aa12.28□□□□□ -0.44
VPS25-203ENST00000589520 BICDL1Q6ZP65 573 aa12.28□□□□□ -0.44
VPS25-203ENST00000589520 KRT27Q7Z3Y8 459 aa12.28□□□□□ -0.44
VPS25-203ENST00000589520 SYAP1Q96A49 352 aaPredicted RBP12.28□□□□□ -0.44
VPS25-203ENST00000589520 NACAP1Q9BZK3 213 aa12.28□□□□□ -0.44
VPS25-203ENST00000589520 PIH1D3Q9NQM4 214 aaKnown RBP12.28□□□□□ -0.44
VPS25-203ENST00000589520 ZNF532Q9HCE3 1301 aa12.28□□□□□ -0.44
VPS25-203ENST00000589520 BTAF1O14981 1849 aa12.27□□□□□ -0.44
VPS25-203ENST00000589520 SCN7AQ01118 1682 aa12.27□□□□□ -0.45
VPS25-203ENST00000589520 TCRBV5S4A2TA0A5A2 114 aa12.27□□□□□ -0.45
VPS25-203ENST00000589520 LARGE1O95461 756 aa12.27□□□□□ -0.45
VPS25-203ENST00000589520 RASGRF1Q13972 1273 aa12.27□□□□□ -0.45
VPS25-203ENST00000589520 RALYLQ86SE5 291 aaKnown RBP12.27□□□□□ -0.45
VPS25-203ENST00000589520 VPS37DQ86XT2 251 aa12.27□□□□□ -0.45
VPS25-203ENST00000589520 STRBPQ96SI9 672 aaKnown RBP12.27□□□□□ -0.45
VPS25-203ENST00000589520 MTA3Q9BTC8 594 aa12.27□□□□□ -0.45
VPS25-203ENST00000589520 DDX60Q8IY21 1712 aaKnown RBP12.27□□□□□ -0.45
VPS25-203ENST00000589520 PNPLA7Q6ZV29 1317 aa12.27□□□□□ -0.45
VPS25-203ENST00000589520 LY75O60449 1722 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 ARAP2Q8WZ64 1704 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 NPHP1O15259 732 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 CHGBP05060 677 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 BCAMP50895 628 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 STOX1Q6ZVD7 989 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 PTF1AQ7RTS3 328 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 FBXO33Q7Z6M2 555 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 LRP2BPQ9P2M1 347 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 SRP68Q9UHB9 627 aaKnown RBP12.26□□□□□ -0.45
VPS25-203ENST00000589520 MTMR6Q9Y217 621 aa12.26□□□□□ -0.45
VPS25-203ENST00000589520 LETM1O95202 739 aaPredicted RBP12.25□□□□□ -0.45
VPS25-203ENST00000589520 APPP05067 770 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 NT5C2P49902 561 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 ZNF445P59923 1031 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 PI16Q6UXB8 463 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 MAGEB6Q8N7X4 407 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 NECAB1Q8N987 351 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 ZNF784Q8NCA9 323 aaPredicted RBP12.25□□□□□ -0.45
VPS25-203ENST00000589520 SMARCC2Q8TAQ2 1214 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 BRF1Q92994 677 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 LARP6Q9BRS8 491 aaKnown RBP12.25□□□□□ -0.45
VPS25-203ENST00000589520 GZF1Q9H116 711 aaPredicted RBP12.25□□□□□ -0.45
VPS25-203ENST00000589520 ZSCAN16Q9H4T2 348 aaPredicted RBP12.25□□□□□ -0.45
VPS25-203ENST00000589520 CNNM2Q9H8M5 875 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 LEMD3Q9Y2U8 911 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 TAF6LQ9Y6J9 622 aa12.25□□□□□ -0.45
VPS25-203ENST00000589520 PHF14O94880 888 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 TM4SF1P30408 202 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 KCNQ4P56696 695 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 C1QTNF8P60827 252 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 ST5P78524 1137 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 ST3GAL1Q11201 340 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 SLFNL1Q499Z3 407 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 ATL3Q6DD88 541 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 TMC4Q7Z404 712 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 MB21D2Q8IYB1 491 aaPredicted RBP12.24□□□□□ -0.45
VPS25-203ENST00000589520 CNBD1Q8NA66 436 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 FAM184AQ8NB25 1140 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 CELF1Q92879 486 aaKnown RBP12.24□□□□□ -0.45
VPS25-203ENST00000589520 TMEM87BQ96K49 555 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 FAM84BQ96KN1 310 aaPredicted RBP12.24□□□□□ -0.45
VPS25-203ENST00000589520 KRT23Q9C075 422 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 RNF41Q9H4P4 317 aaPredicted RBP12.24□□□□□ -0.45
VPS25-203ENST00000589520 WWC3Q9ULE0 1092 aa12.24□□□□□ -0.45
VPS25-203ENST00000589520 AKAP11Q9UKA4 1901 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 FOXP2O15409 715 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 PCP11498 1178 aaKnown RBP12.23□□□□□ -0.45
VPS25-203ENST00000589520 HIBADHP31937 336 aaKnown RBP12.23□□□□□ -0.45
VPS25-203ENST00000589520 UBE2HP62256 183 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms