RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 BCS1LQ9Y276 419 aa19.59■□□□□ 0.73
SS18-226ENST00000585241 SALL1Q9NSC2 1324 aa19.58■□□□□ 0.73
SS18-226ENST00000585241 TBC1D9Q6ZT07 1266 aa19.58■□□□□ 0.72
SS18-226ENST00000585241 ANTXR1Q9H6X2 564 aa19.58■□□□□ 0.72
SS18-226ENST00000585241 IGSF3O75054 1194 aa19.57■□□□□ 0.72
SS18-226ENST00000585241 CHMLP26374 656 aa19.57■□□□□ 0.72
SS18-226ENST00000585241 BACH2Q9BYV9 841 aa19.57■□□□□ 0.72
SS18-226ENST00000585241 IQSEC3Q9UPP2 1182 aaPredicted RBP19.57■□□□□ 0.72
SS18-226ENST00000585241 FAM205AQ6ZU69 1335 aa19.56■□□□□ 0.72
SS18-226ENST00000585241 NFKBIEO00221 500 aa19.56■□□□□ 0.72
SS18-226ENST00000585241 HIP1O00291 1037 aa19.56■□□□□ 0.72
SS18-226ENST00000585241 RIMBP2O15034 1052 aa19.56■□□□□ 0.72
SS18-226ENST00000585241 PODNQ7Z5L7 613 aa19.56■□□□□ 0.72
SS18-226ENST00000585241 FSD1Q9BTV5 496 aa19.56■□□□□ 0.72
SS18-226ENST00000585241 PIH1D3Q9NQM4 214 aaKnown RBP19.56■□□□□ 0.72
SS18-226ENST00000585241 CHD4Q14839 1912 aa19.55■□□□□ 0.72
SS18-226ENST00000585241 TAOK3Q9H2K8 898 aa19.55■□□□□ 0.72
SS18-226ENST00000585241 WWC3Q9ULE0 1092 aa19.55■□□□□ 0.72
SS18-226ENST00000585241 MYH7P12883 1935 aa19.55■□□□□ 0.72
SS18-226ENST00000585241 PPIP5K2O43314 1243 aa19.54■□□□□ 0.72
SS18-226ENST00000585241 AOC3Q16853 763 aa19.54■□□□□ 0.72
SS18-226ENST00000585241 LRRFIP1Q32MZ4 808 aaKnown RBP19.54■□□□□ 0.72
SS18-226ENST00000585241 WDR66Q8TBY9 1149 aa19.54■□□□□ 0.72
SS18-226ENST00000585241 ZNF646O15015 1829 aaPredicted RBP19.53■□□□□ 0.72
SS18-226ENST00000585241 COL4A5P29400 1685 aa19.53■□□□□ 0.72
SS18-226ENST00000585241 FRAT2O75474 233 aaPredicted RBP19.53■□□□□ 0.72
SS18-226ENST00000585241 ZFYP08048 801 aaPredicted RBP19.53■□□□□ 0.72
SS18-226ENST00000585241 CASC1Q6TDU7 716 aa19.53■□□□□ 0.72
SS18-226ENST00000585241 MYO5AQ9Y4I1 1855 aaKnown RBP19.52■□□□□ 0.72
SS18-226ENST00000585241 ECE2O60344 883 aa19.52■□□□□ 0.72
SS18-226ENST00000585241 IARSP41252 1262 aaKnown RBP19.52■□□□□ 0.72
SS18-226ENST00000585241 DOK7Q18PE1 504 aa19.52■□□□□ 0.72
SS18-226ENST00000585241 TMED8Q6PL24 325 aaPredicted RBP19.52■□□□□ 0.72
SS18-226ENST00000585241 ZGPATQ8N5A5 531 aaKnown RBP19.52■□□□□ 0.72
SS18-226ENST00000585241 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.52■□□□□ 0.72
SS18-226ENST00000585241 ZNF277Q9NRM2 450 aaPredicted RBP19.52■□□□□ 0.72
SS18-226ENST00000585241 DIAPH3Q9NSV4 1193 aa19.52■□□□□ 0.72
SS18-226ENST00000585241 MAST2Q6P0Q8 1798 aa19.52■□□□□ 0.71
SS18-226ENST00000585241 RAD50Q92878 1312 aa19.51■□□□□ 0.71
SS18-226ENST00000585241 PSME4Q14997 1843 aa19.51■□□□□ 0.71
SS18-226ENST00000585241 RNF113AO15541 343 aaKnown RBP19.51■□□□□ 0.71
SS18-226ENST00000585241 EIF5BO60841 1220 aaKnown RBP19.51■□□□□ 0.71
SS18-226ENST00000585241 CHAF1AQ13111 956 aaPredicted RBP19.51■□□□□ 0.71
SS18-226ENST00000585241 ZSCAN25Q6NSZ9 544 aa19.51■□□□□ 0.71
SS18-226ENST00000585241 TBC1D22AQ8WUA7 517 aa19.51■□□□□ 0.71
SS18-226ENST00000585241 ESYT1Q9BSJ8 1104 aa19.51■□□□□ 0.71
SS18-226ENST00000585241 DBNDD1Q9H9R9 158 aa19.51■□□□□ 0.71
SS18-226ENST00000585241 SCN9AQ15858 1988 aa19.51■□□□□ 0.71
SS18-226ENST00000585241 ADD2P35612 726 aa19.5■□□□□ 0.71
SS18-226ENST00000585241 FKBP1AP62942 108 aaKnown RBP19.5■□□□□ 0.71
SS18-226ENST00000585241 MAP3K12Q12852 859 aa19.5■□□□□ 0.71
SS18-226ENST00000585241 UBE3CQ15386 1083 aa19.5■□□□□ 0.71
SS18-226ENST00000585241 ZMYM1Q5SVZ6 1142 aa19.5■□□□□ 0.71
SS18-226ENST00000585241 LARGE2Q8N3Y3 721 aa19.5■□□□□ 0.71
SS18-226ENST00000585241 RUFY2Q8WXA3 655 aa19.5■□□□□ 0.71
SS18-226ENST00000585241 TCRBV5S4A2TA0A5A2 114 aa19.49■□□□□ 0.71
SS18-226ENST00000585241 G3V3G9 751 aa19.49■□□□□ 0.71
SS18-226ENST00000585241 SGSM2O43147 1006 aa19.49■□□□□ 0.71
SS18-226ENST00000585241 IDH1O75874 414 aaKnown RBP19.49■□□□□ 0.71
SS18-226ENST00000585241 PDE6AP16499 860 aa19.49■□□□□ 0.71
SS18-226ENST00000585241 NMIQ13287 307 aaPredicted RBP19.49■□□□□ 0.71
SS18-226ENST00000585241 DCAF8Q5TAQ9 597 aa19.49■□□□□ 0.71
SS18-226ENST00000585241 STRIP1Q5VSL9 837 aa19.49■□□□□ 0.71
SS18-226ENST00000585241 SPTY2D1Q68D10 685 aaPredicted RBP19.49■□□□□ 0.71
SS18-226ENST00000585241 SUGT1Q9Y2Z0 365 aa19.49■□□□□ 0.71
SS18-226ENST00000585241 A0A0D9SFI3 127 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 YDJCA8MPS7 323 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 GTF2IP78347 998 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 ERICH6Q7L0X2 663 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 APPBP2Q92624 585 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 FAM227BQ96M60 508 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 IL25Q9H293 177 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 HELLSQ9NRZ9 838 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 LRP2BPQ9P2M1 347 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 ABCF2Q9UG63 623 aa19.48■□□□□ 0.71
SS18-226ENST00000585241 CHGBP05060 677 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 YBX3P16989 372 aaKnown RBP eCLIP19.47■□□□□ 0.71
SS18-226ENST00000585241 PRDX5P30044 214 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 PRELPP51888 382 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 RASSF7Q02833 373 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 SLC9C2Q5TAH2 1124 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 TTLL5Q6EMB2 1281 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 CWC27Q6UX04 472 aaKnown RBP19.47■□□□□ 0.71
SS18-226ENST00000585241 NIM1KQ8IY84 436 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 ZNF384Q8TF68 577 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 JAG2Q9Y219 1238 aa19.47■□□□□ 0.71
SS18-226ENST00000585241 CCDC88AQ3V6T2 1871 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 USP17L3A6NCW0 530 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 USP17L4A6NCW7 530 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 EPB41L2O43491 1005 aaKnown RBP19.46■□□□□ 0.71
SS18-226ENST00000585241 SEC24BO95487 1268 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 MFSD14BQ5SR56 506 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 DACT2Q5SW24 774 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 USP17L1Q7RTZ2 530 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 NSUN4Q96CB9 384 aaKnown RBP19.46■□□□□ 0.71
SS18-226ENST00000585241 ZNRF3Q9ULT6 936 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 ZNF532Q9HCE3 1301 aa19.46■□□□□ 0.71
SS18-226ENST00000585241 LDHBP07195 334 aaKnown RBP19.45■□□□□ 0.7
SS18-226ENST00000585241 MCMDC2Q4G0Z9 681 aa19.45■□□□□ 0.7
SS18-226ENST00000585241 CERS5Q8N5B7 392 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms