RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 GBP2P32456 591 aaPredicted RBP8.13□□□□□ -1.11
USP3-210ENST00000559192 PNOCQ13519 176 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 TNNI3KQ59H18 835 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 LRP2BPQ9P2M1 347 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 FPGT-TNNI3KV9GXZ4 949 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 RNF17Q9BXT8 1623 aaKnown RBP8.13□□□□□ -1.11
USP3-210ENST00000559192 ANKRD62A6NC57 917 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 TUBB4AP04350 444 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 CEP112Q8N8E3 955 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 ARHGEF10O15013 1369 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 USP27XA6NNY8 438 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 IVLP07476 585 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 MTX1Q13505 466 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 SPA17Q15506 151 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 ZCCHC11Q5TAX3 1644 aaKnown RBP8.12□□□□□ -1.11
USP3-210ENST00000559192 LONRF3Q496Y0 759 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 RRAGBQ5VZM2 374 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 DRC1Q96MC2 740 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 PAIP2Q9BPZ3 127 aaKnown RBP8.12□□□□□ -1.11
USP3-210ENST00000559192 SPTLC3Q9NUV7 552 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 CWC25Q9NXE8 425 aaPredicted RBP8.12□□□□□ -1.11
USP3-210ENST00000559192 SBNO1A3KN83 1393 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 ELP1O95163 1332 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 ZBTB43O43298 467 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 ANO1Q5XXA6 986 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 THEMISQ8N1K5 641 aaPredicted RBP8.12□□□□□ -1.11
USP3-210ENST00000559192 MICALL1Q8N3F8 863 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 ATF3P18847 181 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 MCM3P25205 808 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 CDC25BP30305 580 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 SCRN1Q12765 414 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 IFIT5Q13325 482 aaKnown RBP8.12□□□□□ -1.11
USP3-210ENST00000559192 TTC31Q49AM3 519 aaPredicted RBP8.12□□□□□ -1.11
USP3-210ENST00000559192 FBXO38Q6PIJ6 1188 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 TOM1L2Q6ZVM7 507 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 ZNF589Q86UQ0 364 aaPredicted RBP8.12□□□□□ -1.11
USP3-210ENST00000559192 PI4K2BQ8TCG2 481 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 GUCA1BQ9UMX6 200 aa8.12□□□□□ -1.11
USP3-210ENST00000559192 AK9Q5TCS8 1911 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 ADKP55263 362 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 SARNPP82979 210 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 BRAPQ7Z569 592 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 ZNF710Q8N1W2 664 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 IL17REQ8NFR9 667 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 EAF2Q96CJ1 260 aaPredicted RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 MRFAP1L1Q96HT8 127 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 MPHOSPH8Q99549 860 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 UHRF1BP1LA0JNW5 1464 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 NDUFA8P51970 172 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 SEPT7Q16181 437 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 MICALCLQ6ZW33 695 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 TRMT44Q8IYL2 757 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 ABCF2Q9UG63 623 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 TULP4Q9NRJ4 1543 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 TMCO5BA8MYB1 307 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 GPTP24298 496 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 CHMP4BP1P59074 171 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 TIMM10P62072 90 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 SLC4A8Q2Y0W8 1093 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 CCDC144BQ3MJ40 725 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 HDXQ7Z353 690 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 LLPHQ9BRT6 129 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 DESI2Q9BSY9 194 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 RABEP2Q9H5N1 569 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 RNMTO43148 476 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 RANBP6O60518 1105 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 CCT6AP40227 531 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 SMC1AQ14683 1233 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 DNAJC21Q5F1R6 531 aaKnown RBP8.11□□□□□ -1.11
USP3-210ENST00000559192 BEND3Q5T5X7 828 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 NBPF11Q86T75 865 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 CLIC4Q9Y696 253 aa8.11□□□□□ -1.11
USP3-210ENST00000559192 EIF4A1P60842 406 aaKnown RBP8.1□□□□□ -1.11
USP3-210ENST00000559192 NAA16Q6N069 864 aaPredicted RBP8.1□□□□□ -1.11
USP3-210ENST00000559192 ZHX3Q9H4I2 956 aa8.1□□□□□ -1.11
USP3-210ENST00000559192 AKR1B15C9JRZ8 316 aaPredicted RBP8.1□□□□□ -1.11
USP3-210ENST00000559192 ATL3Q6DD88 541 aa8.1□□□□□ -1.11
USP3-210ENST00000559192 BCCIPQ9P287 314 aaKnown RBP eCLIP8.1□□□□□ -1.11
USP3-210ENST00000559192 PCDHA7Q9UN72 937 aa8.1□□□□□ -1.11
USP3-210ENST00000559192 EFCAB6Q5THR3 1501 aa8.1□□□□□ -1.11
USP3-210ENST00000559192 EZRP15311 586 aaKnown RBP8.1□□□□□ -1.11
USP3-210ENST00000559192 SNRPA1P09661 255 aaKnown RBP8.1□□□□□ -1.11
USP3-210ENST00000559192 PFKFB1P16118 471 aa8.1□□□□□ -1.11
USP3-210ENST00000559192 KANK3Q6NY19 840 aa8.1□□□□□ -1.11
USP3-210ENST00000559192 HELLSQ9NRZ9 838 aa8.1□□□□□ -1.11
USP3-210ENST00000559192 KIAA1468Q9P260 1216 aa8.1□□□□□ -1.11
USP3-210ENST00000559192 CPSF2Q9P2I0 782 aaKnown RBP8.1□□□□□ -1.11
USP3-210ENST00000559192 E7EWF7 191 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 WDHD1O75717 1129 aaPredicted RBP8.09□□□□□ -1.11
USP3-210ENST00000559192 DPCR1Q3MIW9 517 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 MFSD6Q6ZSS7 791 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 PROSER2Q86WR7 435 aaPredicted RBP8.09□□□□□ -1.11
USP3-210ENST00000559192 NFATC2IPQ8NCF5 419 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 ZKSCAN3Q9BRR0 538 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 MYL10Q9BUA6 226 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 CTNND2Q9UQB3 1225 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 ADCY9O60503 1353 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 ZBTB22O15209 634 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 NLRP5P59047 1200 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 MAP2K1Q02750 393 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms