RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 QTRT2Q9H974 415 aaKnown RBP8.45□□□□□ -1.06
VPS29-210ENST00000552130 TERF2IPQ9NYB0 399 aa8.45□□□□□ -1.06
VPS29-210ENST00000552130 EGFL7Q9UHF1 273 aa8.45□□□□□ -1.06
VPS29-210ENST00000552130 F8W735 103 aaPredicted RBP8.44□□□□□ -1.06
VPS29-210ENST00000552130 H3BRB1 525 aa8.44□□□□□ -1.06
VPS29-210ENST00000552130 SASH3O75995 380 aa8.44□□□□□ -1.06
VPS29-210ENST00000552130 RARAP10276 462 aa8.44□□□□□ -1.06
VPS29-210ENST00000552130 PTMSP20962 102 aa8.44□□□□□ -1.06
VPS29-210ENST00000552130 FAM50AQ14320 339 aaKnown RBP8.44□□□□□ -1.06
VPS29-210ENST00000552130 LDLRAD1Q5T700 205 aa8.44□□□□□ -1.06
VPS29-210ENST00000552130 PMM1Q92871 262 aa8.44□□□□□ -1.06
VPS29-210ENST00000552130 MYO19Q96H55 970 aa8.44□□□□□ -1.06
VPS29-210ENST00000552130 TUT1Q9H6E5 874 aaKnown RBP8.44□□□□□ -1.06
VPS29-210ENST00000552130 TLR7Q9NYK1 1049 aaKnown RBP8.44□□□□□ -1.06
VPS29-210ENST00000552130 COL4A3BPQ9Y5P4 624 aa8.44□□□□□ -1.06
VPS29-210ENST00000552130 OPLAHO14841 1288 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 CREB3O43889 395 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 MICAL2O94851 1124 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 ABL1P00519 1130 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 HOXD8P13378 290 aaPredicted RBP8.43□□□□□ -1.06
VPS29-210ENST00000552130 CRTC2Q53ET0 693 aaPredicted RBP8.43□□□□□ -1.06
VPS29-210ENST00000552130 ZNF746Q6NUN9 644 aaPredicted RBP8.43□□□□□ -1.06
VPS29-210ENST00000552130 JAZF1Q86VZ6 243 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 FAM200AQ8TCP9 573 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 FMNL2Q96PY5 1086 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 MRPL18Q9H0U6 180 aaKnown RBP8.43□□□□□ -1.06
VPS29-210ENST00000552130 PRDM10Q9NQV6 1147 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 DCTN4Q9UJW0 460 aa8.43□□□□□ -1.06
VPS29-210ENST00000552130 LAS1LQ9Y4W2 734 aaKnown RBP8.43□□□□□ -1.06
VPS29-210ENST00000552130 U2SURPO15042 1029 aaKnown RBP8.42□□□□□ -1.06
VPS29-210ENST00000552130 ALX3O95076 343 aa8.42□□□□□ -1.06
VPS29-210ENST00000552130 RBL2Q08999 1139 aa8.42□□□□□ -1.06
VPS29-210ENST00000552130 DGKZQ13574 1117 aa8.42□□□□□ -1.06
VPS29-210ENST00000552130 LARP1Q6PKG0 1096 aaKnown RBP8.42□□□□□ -1.06
VPS29-210ENST00000552130 GLYCTKQ8IVS8 523 aa8.42□□□□□ -1.06
VPS29-210ENST00000552130 SGSM3Q96HU1 749 aa8.42□□□□□ -1.06
VPS29-210ENST00000552130 HINFPQ9BQA5 517 aa8.42□□□□□ -1.06
VPS29-210ENST00000552130 PCMTD2Q9NV79 361 aa8.42□□□□□ -1.06
VPS29-210ENST00000552130 HSD3B2P26439 372 aa8.41□□□□□ -1.06
VPS29-210ENST00000552130 DPYDQ12882 1025 aa8.41□□□□□ -1.06
VPS29-210ENST00000552130 ZNF211Q13398 564 aaPredicted RBP8.41□□□□□ -1.06
VPS29-210ENST00000552130 GNL2Q13823 731 aaKnown RBP8.41□□□□□ -1.06
VPS29-210ENST00000552130 SOGA3Q5TF21 947 aa8.41□□□□□ -1.06
VPS29-210ENST00000552130 HFE2Q6ZVN8 426 aa8.41□□□□□ -1.06
VPS29-210ENST00000552130 TMEM87AQ8NBN3 555 aa8.41□□□□□ -1.06
VPS29-210ENST00000552130 GMLQ99445 158 aa8.41□□□□□ -1.06
VPS29-210ENST00000552130 SRA1Q9HD15 236 aaKnown RBP8.41□□□□□ -1.06
VPS29-210ENST00000552130 GABBR1Q9UBS5 961 aa8.41□□□□□ -1.06
VPS29-210ENST00000552130 KIAA1324LA8MWY0 1029 aaPredicted RBP8.4□□□□□ -1.06
VPS29-210ENST00000552130 ICMTO60725 284 aa8.4□□□□□ -1.06
VPS29-210ENST00000552130 LGR5O75473 907 aa8.4□□□□□ -1.06
VPS29-210ENST00000552130 WEE1P30291 646 aa8.4□□□□□ -1.06
VPS29-210ENST00000552130 DNAJA1P31689 397 aaKnown RBP8.4□□□□□ -1.06
VPS29-210ENST00000552130 SETDB1Q15047 1291 aa8.4□□□□□ -1.06
VPS29-210ENST00000552130 C11orf91Q3C1V1 193 aa8.4□□□□□ -1.06
VPS29-210ENST00000552130 PLEKHG6Q3KR16 790 aa8.4□□□□□ -1.06
VPS29-210ENST00000552130 CCAR1Q8IX12 1150 aaKnown RBP8.4□□□□□ -1.06
VPS29-210ENST00000552130 OSBPL2Q9H1P3 480 aa8.4□□□□□ -1.06
VPS29-210ENST00000552130 FOXO3O43524 673 aa8.39□□□□□ -1.07
VPS29-210ENST00000552130 PPFIA4O75335 1185 aa8.39□□□□□ -1.07
VPS29-210ENST00000552130 EIF2AK2P19525 551 aaKnown RBP8.39□□□□□ -1.07
VPS29-210ENST00000552130 SSTR4P31391 388 aa8.39□□□□□ -1.07
VPS29-210ENST00000552130 TMTC2Q8N394 836 aa8.39□□□□□ -1.07
VPS29-210ENST00000552130 PLD4Q96BZ4 506 aa8.39□□□□□ -1.07
VPS29-210ENST00000552130 EVI5LQ96CN4 794 aa8.39□□□□□ -1.07
VPS29-210ENST00000552130 IRF2BPLQ9H1B7 796 aa8.39□□□□□ -1.07
VPS29-210ENST00000552130 PCDH12Q9NPG4 1184 aa8.39□□□□□ -1.07
VPS29-210ENST00000552130 RTCBQ9Y3I0 505 aaKnown RBP8.39□□□□□ -1.07
VPS29-210ENST00000552130 LOC102724428A0A0B4J2F2 783 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 MED26O95402 600 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 SOX18P35713 384 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 SIK1P57059 783 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 ANKMY2Q8IV38 441 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 MAP4K3Q8IVH8 894 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 CCDC146Q8IYE0 955 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 RGL4Q8IZJ4 473 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 GPATCH11Q8N954 259 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 RNF34Q969K3 372 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 ACBD3Q9H3P7 528 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 ANO2Q9NQ90 1003 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 METTL5Q9NRN9 209 aaKnown RBP8.38□□□□□ -1.07
VPS29-210ENST00000552130 LRFN2Q9ULH4 789 aa8.38□□□□□ -1.07
VPS29-210ENST00000552130 J3QW42 95 aa8.37□□□□□ -1.07
VPS29-210ENST00000552130 FANCCQ00597 558 aa8.37□□□□□ -1.07
VPS29-210ENST00000552130 BMS1Q14692 1282 aaKnown RBP8.37□□□□□ -1.07
VPS29-210ENST00000552130 SWI5Q1ZZU3 235 aa8.37□□□□□ -1.07
VPS29-210ENST00000552130 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.37□□□□□ -1.07
VPS29-210ENST00000552130 NME8Q8N427 588 aa8.37□□□□□ -1.07
VPS29-210ENST00000552130 KCNMB2Q9Y691 235 aa8.37□□□□□ -1.07
VPS29-210ENST00000552130 MRPL42Q9Y6G3 142 aaKnown RBP8.37□□□□□ -1.07
VPS29-210ENST00000552130 TM4SF5O14894 197 aa8.36□□□□□ -1.07
VPS29-210ENST00000552130 PAX4O43316 350 aa8.36□□□□□ -1.07
VPS29-210ENST00000552130 P4HBP07237 508 aaKnown RBP8.36□□□□□ -1.07
VPS29-210ENST00000552130 TNNI2P48788 182 aa8.36□□□□□ -1.07
VPS29-210ENST00000552130 LONRF3Q496Y0 759 aa8.36□□□□□ -1.07
VPS29-210ENST00000552130 FILIP1Q7Z7B0 1213 aa8.36□□□□□ -1.07
VPS29-210ENST00000552130 IFT57Q9NWB7 429 aa8.36□□□□□ -1.07
VPS29-210ENST00000552130 G3BP2Q9UN86 482 aaKnown RBP8.36□□□□□ -1.07
VPS29-210ENST00000552130 USP20Q9Y2K6 914 aa8.36□□□□□ -1.07
VPS29-210ENST00000552130 RAXQ9Y2V3 346 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms