RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 PRC1O43663 620 aa15.01□□□□□ -0.01
TCOF1-213ENST00000514442 IBSPP21815 317 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-213ENST00000514442 KIF5BP33176 963 aa15.01□□□□□ -0.01
TCOF1-213ENST00000514442 NDUFB9Q9Y6M9 179 aa15.01□□□□□ -0.01
TCOF1-213ENST00000514442 GOLGA6L10A6NI86 522 aa15.01□□□□□ -0.01
TCOF1-213ENST00000514442 NEK11Q8NG66 645 aa15.01□□□□□ -0.01
TCOF1-213ENST00000514442 ZNF215Q9UL58 517 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-213ENST00000514442 NSFL1CQ9UNZ2 370 aaKnown RBP15.01□□□□□ -0.01
TCOF1-213ENST00000514442 MLH3Q9UHC1 1453 aa15.01□□□□□ -0.01
TCOF1-213ENST00000514442 DNAJC10Q8IXB1 793 aa15.01□□□□□ -0.01
TCOF1-213ENST00000514442 CCDC12Q8WUD4 166 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-213ENST00000514442 DBNDD2Q9BQY9 259 aa15.01□□□□□ -0.01
TCOF1-213ENST00000514442 SEPT11Q9NVA2 429 aaKnown RBP15.01□□□□□ -0.01
TCOF1-213ENST00000514442 PRDM15P57071 1507 aaPredicted RBP15.01□□□□□ -0.01
TCOF1-213ENST00000514442 APOBRQ0VD83 1088 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 BABAM1Q9NWV8 329 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 TFCP2L1Q9NZI6 479 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 TRMT1LQ7Z2T5 733 aaKnown RBP15□□□□□ -0.01
TCOF1-213ENST00000514442 ALG1Q9BT22 464 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 KRT23Q9C075 422 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 UBA5Q9GZZ9 404 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 ITGA6P23229 1130 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 IFIT1BQ5T764 474 aaKnown RBP15□□□□□ -0.01
TCOF1-213ENST00000514442 ZSWIM4Q9H7M6 989 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 GOLGA6L7A0A1B0GV03 622 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 TSPY3P0CV98 308 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 TSPY8P0CW00 308 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 EVCP57679 992 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 FAM98CQ17RN3 349 aaKnown RBP15□□□□□ -0.01
TCOF1-213ENST00000514442 CBX8Q9HC52 389 aa15□□□□□ -0.01
TCOF1-213ENST00000514442 DDX41Q9UJV9 622 aaKnown RBP15□□□□□ -0.01
TCOF1-213ENST00000514442 MAGEB6P1A0A0J9YX57 407 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 HOXB7P09629 217 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 ESR2Q92731 530 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 NYXQ9GZU5 481 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 RXRAP19793 462 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 SYT1P21579 422 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 GSTO1P78417 241 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 ROBO2Q9HCK4 1378 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 HLA-DOAP06340 250 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 TNNI3KQ59H18 835 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 FPGT-TNNI3KV9GXZ4 949 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 RNF187Q5TA31 235 aaPredicted RBP14.99□□□□□ -0.01
TCOF1-213ENST00000514442 CCDC24Q8N4L8 307 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 AOPEPQ8N6M6 819 aa14.99□□□□□ -0.01
TCOF1-213ENST00000514442 EYA2O00167 538 aa14.98□□□□□ -0.01
TCOF1-213ENST00000514442 RTN1Q16799 776 aa14.98□□□□□ -0.01
TCOF1-213ENST00000514442 CLEC17AQ6ZS10 378 aa14.98□□□□□ -0.01
TCOF1-213ENST00000514442 PLA2R1Q13018 1463 aa14.98□□□□□ -0.01
TCOF1-213ENST00000514442 HECW2Q9P2P5 1572 aa14.98□□□□□ -0.01
TCOF1-213ENST00000514442 RIMBP2O15034 1052 aa14.98□□□□□ -0.01
TCOF1-213ENST00000514442 MATR3P43243 847 aaKnown RBP eCLIP14.98□□□□□ -0.01
TCOF1-213ENST00000514442 NCBP1Q09161 790 aaKnown RBP14.98□□□□□ -0.01
TCOF1-213ENST00000514442 HDXQ7Z353 690 aa14.98□□□□□ -0.01
TCOF1-213ENST00000514442 MYOM2P54296 1465 aa14.98□□□□□ -0.01
TCOF1-213ENST00000514442 TMEM266Q2M3C6 531 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 BANK1Q8NDB2 785 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 CUL5Q93034 780 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 PLEKHF1Q96S99 279 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 GCKRQ14397 625 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 GBP6Q6ZN66 633 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 ZNF804AQ7Z570 1209 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 GOLGA5Q8TBA6 731 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 CNNM2Q9H8M5 875 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 PLEKHG1Q9ULL1 1385 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 DTNBO60941 627 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 CEP112Q8N8E3 955 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 CPLX3Q8WVH0 158 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 ZSCAN16Q9H4T2 348 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-213ENST00000514442 CCNL1Q9UK58 526 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-213ENST00000514442 FAM135BQ49AJ0 1406 aa14.97□□□□□ -0.01
TCOF1-213ENST00000514442 EBAG9O00559 213 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 ZBTB22O15209 634 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 TTLL12Q14166 644 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-213ENST00000514442 WDR78Q5VTH9 848 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 HNRNPH2P55795 449 aaKnown RBP14.96□□□□□ -0.01
TCOF1-213ENST00000514442 FAM227BQ96M60 508 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 SPTLC3Q9NUV7 552 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 MARCKSP29966 332 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-213ENST00000514442 CHMP4BP1P59074 171 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 LRMPQ12912 555 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 CABP5Q9NP86 173 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 CCDC181Q5TID7 509 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 WWC2Q6AWC2 1192 aa14.96□□□□□ -0.01
TCOF1-213ENST00000514442 TUBB4BP68371 445 aa14.96□□□□□ -0.02
TCOF1-213ENST00000514442 RUFY3Q7L099 469 aa14.96□□□□□ -0.02
TCOF1-213ENST00000514442 ZKSCAN3Q9BRR0 538 aa14.96□□□□□ -0.02
TCOF1-213ENST00000514442 RAB34Q9BZG1 259 aa14.96□□□□□ -0.02
TCOF1-213ENST00000514442 MCM9Q9NXL9 1143 aa14.96□□□□□ -0.02
TCOF1-213ENST00000514442 MKRN1Q9UHC7 482 aaKnown RBP14.96□□□□□ -0.02
TCOF1-213ENST00000514442 TAF5LO75529 589 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 SMC1AQ14683 1233 aaKnown RBP14.95□□□□□ -0.02
TCOF1-213ENST00000514442 SH3TC1Q8TE82 1336 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 CHAMP1Q96JM3 812 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 PRR36Q9H6K5 1346 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.95□□□□□ -0.026e-7■■■□□ 15
TCOF1-213ENST00000514442 CDC42BPAQ5VT25 1732 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 TMEM94Q12767 1356 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 MBD4O95243 580 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 IDEP14735 1019 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms