RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 L1TD1Q5T7N2 865 aaKnown RBP9.47□□□□□ -0.89
USP4-207ENST00000462673 SPTY2D1Q68D10 685 aaPredicted RBP9.47□□□□□ -0.89
USP4-207ENST00000462673 RSBN1LQ6PCB5 846 aaPredicted RBP9.47□□□□□ -0.89
USP4-207ENST00000462673 USP50Q70EL3 339 aaPredicted RBP9.47□□□□□ -0.89
USP4-207ENST00000462673 SLF2Q8IX21 1173 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 TDRD7Q8NHU6 1098 aaKnown RBP9.47□□□□□ -0.89
USP4-207ENST00000462673 XAGE2Q96GT9 111 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 L3MBTL3Q96JM7 780 aaPredicted RBP9.47□□□□□ -0.89
USP4-207ENST00000462673 RRAGCQ9HB90 399 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 EXOC6BQ9Y2D4 811 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 SNED1Q8TER0 1413 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 TAF1P21675 1872 aa9.47□□□□□ -0.89
USP4-207ENST00000462673 LRRC37AA6NMS7 1700 aa9.46□□□□□ -0.89
USP4-207ENST00000462673 PSMD14O00487 310 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 MYO1BO43795 1136 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 USP17L8P0C7I0 530 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 PRELPP51888 382 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 TNNI3KQ59H18 835 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 TTC39AQ5SRH9 613 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 TMED8Q6PL24 325 aaPredicted RBP9.46□□□□□ -0.9
USP4-207ENST00000462673 ZNF784Q8NCA9 323 aaPredicted RBP9.46□□□□□ -0.9
USP4-207ENST00000462673 ZNF526Q8TF50 670 aaPredicted RBP9.46□□□□□ -0.9
USP4-207ENST00000462673 MRIQ9BWK5 157 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 ADARB2Q9NS39 739 aaKnown RBP9.46□□□□□ -0.9
USP4-207ENST00000462673 CNOT7Q9UIV1 285 aaKnown RBP9.46□□□□□ -0.9
USP4-207ENST00000462673 FPGT-TNNI3KV9GXZ4 949 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 MAST3O60307 1309 aa9.46□□□□□ -0.9
USP4-207ENST00000462673 SBF1O95248 1867 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 APBB1O00213 710 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 BCAMP50895 628 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 CCDC102BQ68D86 513 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 AACSQ86V21 672 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 TXNRD3Q86VQ6 643 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 SIRT2Q8IXJ6 389 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 ZC3H15Q8WU90 426 aaKnown RBP9.45□□□□□ -0.9
USP4-207ENST00000462673 ZNF512BQ96KM6 892 aaPredicted RBP9.45□□□□□ -0.9
USP4-207ENST00000462673 CLEC11AQ9Y240 323 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 PCDHB15Q9Y5E8 787 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 FAM205AQ6ZU69 1335 aa9.45□□□□□ -0.9
USP4-207ENST00000462673 DICER1Q9UPY3 1922 aaKnown RBP9.44□□□□□ -0.9
USP4-207ENST00000462673 YDJCA8MPS7 323 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 SNAP23O00161 211 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 ERC2O15083 957 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 TOMM70O94826 608 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 LDHCP07864 332 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 EPHX2P34913 555 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 GMPSP49915 693 aaPredicted RBP9.44□□□□□ -0.9
USP4-207ENST00000462673 TTF1Q15361 905 aaPredicted RBP9.44□□□□□ -0.9
USP4-207ENST00000462673 LRRFIP1Q32MZ4 808 aaKnown RBP9.44□□□□□ -0.9
USP4-207ENST00000462673 MFSD14BQ5SR56 506 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 DACT2Q5SW24 774 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 ANKRD45Q5TZF3 282 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 GPR101Q96P66 508 aaPredicted RBP9.44□□□□□ -0.9
USP4-207ENST00000462673 GPRC5DQ9NZD1 345 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 PDS5AQ29RF7 1337 aaKnown RBP9.44□□□□□ -0.9
USP4-207ENST00000462673 UTRNP46939 3433 aa9.44□□□□□ -0.9
USP4-207ENST00000462673 CCDC88AQ3V6T2 1871 aa9.43□□□□□ -0.9
USP4-207ENST00000462673 WTIPA6NIX2 430 aaPredicted RBP9.43□□□□□ -0.9
USP4-207ENST00000462673 GSTO1P78417 241 aa9.43□□□□□ -0.9
USP4-207ENST00000462673 HDLBPQ00341 1268 aaKnown RBP9.43□□□□□ -0.9
USP4-207ENST00000462673 CHAF1AQ13111 956 aaPredicted RBP9.43□□□□□ -0.9
USP4-207ENST00000462673 SPATA5Q8NB90 893 aa9.43□□□□□ -0.9
USP4-207ENST00000462673 CCDC8Q9H0W5 538 aaPredicted RBP9.43□□□□□ -0.9
USP4-207ENST00000462673 ZNF541Q9H0D2 1346 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 SALL1Q9NSC2 1324 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 IRS2Q9Y4H2 1338 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 LDHBP07195 334 aaKnown RBP9.42□□□□□ -0.9
USP4-207ENST00000462673 KLRK1P26718 216 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 ARID4AP29374 1257 aaPredicted RBP9.42□□□□□ -0.9
USP4-207ENST00000462673 RBM5P52756 815 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP4-207ENST00000462673 FSTL1Q12841 308 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 DLGAP5Q15398 846 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 EAPPQ56P03 285 aaPredicted RBP9.42□□□□□ -0.9
USP4-207ENST00000462673 LDHDQ86WU2 507 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 MICALL2Q8IY33 904 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 SMC1BQ8NDV3 1235 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP4-207ENST00000462673 DCPSQ96C86 337 aaKnown RBP9.42□□□□□ -0.9
USP4-207ENST00000462673 EAF2Q96CJ1 260 aaPredicted RBP9.42□□□□□ -0.9
USP4-207ENST00000462673 NOL10Q9BSC4 688 aaKnown RBP9.42□□□□□ -0.9
USP4-207ENST00000462673 TAF1DQ9H5J8 278 aaPredicted RBP9.42□□□□□ -0.9
USP4-207ENST00000462673 IL1RAPL2Q9NP60 686 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 KCNQ5Q9NR82 932 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 LRP2BPQ9P2M1 347 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 ABCF2Q9UG63 623 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 SERPINA10Q9UK55 444 aa9.42□□□□□ -0.9
USP4-207ENST00000462673 ZBTB12Q9Y330 459 aaPredicted RBP9.42□□□□□ -0.9
USP4-207ENST00000462673 SPEF2Q9C093 1822 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 EPS15P42566 896 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 PHKA1P46020 1223 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 SCNN1DP51172 638 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 ZNF280AP59817 542 aaPredicted RBP9.41□□□□□ -0.9
USP4-207ENST00000462673 RBM26Q5T8P6 1007 aaKnown RBP9.41□□□□□ -0.9
USP4-207ENST00000462673 ZSCAN25Q6NSZ9 544 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 CERS3Q8IU89 383 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 KIAA0825Q8IV33 1275 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 RBM46Q8TBY0 533 aaKnown RBP9.41□□□□□ -0.9
USP4-207ENST00000462673 TEKT1Q969V4 418 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 DBNDD2Q9BQY9 259 aa9.41□□□□□ -0.9
USP4-207ENST00000462673 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms