RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 KIAA0754O94854 1291 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 SMC2O95347 1197 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 IVLP07476 585 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 TPM1P09493 284 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 USP5P45974 858 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 CAMK4Q16566 473 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 ZNF772Q68DY9 489 aaPredicted RBP6.57□□□□□ -1.36
RFFL-202ENST00000394597 SEPT12Q8IYM1 358 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 TRIM22Q8IYM9 498 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 LPIN2Q92539 896 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 ERCC4Q92889 916 aaPredicted RBP6.57□□□□□ -1.36
RFFL-202ENST00000394597 IQSEC3Q9UPP2 1182 aaPredicted RBP6.57□□□□□ -1.36
RFFL-202ENST00000394597 OVOS2A0A0G2JMS6 1433 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 SPATA31A1Q5TZJ5 1347 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 CYP7A1P22680 504 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 RBM5P52756 815 aaKnown RBP eCLIP6.57□□□□□ -1.36
RFFL-202ENST00000394597 NLRP10Q86W26 655 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 RASSF8Q8NHQ8 419 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 TMX3Q96JJ7 454 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 ZNF396Q96N95 335 aaPredicted RBP6.57□□□□□ -1.36
RFFL-202ENST00000394597 BRMS1Q9HCU9 246 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 PARP3Q9Y6F1 533 aa6.57□□□□□ -1.36
RFFL-202ENST00000394597 PALLDQ8WX93 1383 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 EPB41L2O43491 1005 aaKnown RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 MARCH6O60337 910 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 KDM4AO75164 1064 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 ERLIN1O75477 346 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 APBA3O96018 575 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 CYP19A1P11511 503 aaPredicted RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 MTX1Q13505 466 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 TERF2Q15554 542 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 VPS72Q15906 364 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 FAM182BQ5T319 152 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 ZGPATQ8N5A5 531 aaKnown RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 KBTBD3Q8NAB2 608 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 ANKRD20A12PQ8NF67 263 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 LARP6Q9BRS8 491 aaKnown RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 CENPHQ9H3R5 247 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 KIF1AQ12756 1690 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 SPATA31A6Q5VVP1 1343 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 NBPF26B4DH59 902 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 CIAO1O76071 339 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 BAG3O95817 575 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 CDR1P51861 262 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 LRRC24Q50LG9 513 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 NBPF14Q5TI25 921 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 CREB3L3Q68CJ9 461 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 NBPF10Q6P3W6 841 aaKnown RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 CCDC73Q6ZRK6 1079 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 NBPF15Q8N660 670 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 NCOA7Q8NI08 942 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 NUP133Q8WUM0 1156 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 RBM17Q96I25 401 aaKnown RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 ZNF287Q9HBT7 754 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 GPR108Q9NPR9 543 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 ANKRD26Q9UPS8 1709 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 AFF2P51816 1311 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 CCDC171Q6TFL3 1326 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 ADCY9O60503 1353 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 FMN2Q9NZ56 1722 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 POLR3DP05423 398 aaPredicted RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 CAPN2P17655 700 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 HAND2P61296 217 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 KRT27Q7Z3Y8 459 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 NAT10Q9H0A0 1025 aaKnown RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 NSFL1CQ9UNZ2 370 aaKnown RBP6.56□□□□□ -1.36
RFFL-202ENST00000394597 MTMR7Q9Y216 660 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 MON2Q7Z3U7 1717 aa6.56□□□□□ -1.36
RFFL-202ENST00000394597 KRT85P78386 507 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 GSTO1P78417 241 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 PTPN12Q05209 780 aaKnown RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 ELF2Q15723 593 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 USPL1Q5W0Q7 1092 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 NAA16Q6N069 864 aaPredicted RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 BARGINQ6ZT62 677 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 MICALL1Q8N3F8 863 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 NEK11Q8NG66 645 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 DDX11Q96FC9 970 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 TAF5LO75529 589 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 SNW1Q13573 536 aaKnown RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 ZSCAN26Q16670 478 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 ARHGAP29Q52LW3 1261 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 ZNF804AQ7Z570 1209 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 CKAP2LQ8IYA6 745 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 GJD4Q96KN9 370 aaPredicted RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 FAM107BQ9H098 131 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 GREM2Q9H772 168 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 MKNK2Q9HBH9 465 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 DENND2AQ9ULE3 1009 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 IFIT3O14879 490 aaKnown RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 NEMFO60524 1076 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 HNRNPH2P55795 449 aaKnown RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 RPS8P62241 208 aaKnown RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 HLFQ16534 295 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 MFSD6Q6ZSS7 791 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 ERO1AQ96HE7 468 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 FAM227BQ96M60 508 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 SDF4Q9BRK5 362 aa6.55□□□□□ -1.36
RFFL-202ENST00000394597 ZNF219Q9P2Y4 722 aaPredicted RBP6.55□□□□□ -1.36
RFFL-202ENST00000394597 SLC4A4Q9Y6R1 1079 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms