RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ANKRD13DQ6ZTN6 518 aa24.57■■□□□ 1.52
UPF3A-202ENST00000375299 UBE3BQ7Z3V4 1068 aa24.57■■□□□ 1.52
UPF3A-202ENST00000375299 KCNG4Q8TDN1 519 aa24.57■■□□□ 1.52
UPF3A-202ENST00000375299 A0A0G2JLW4 131 aa24.56■■□□□ 1.52
UPF3A-202ENST00000375299 GOLIM4O00461 696 aa24.56■■□□□ 1.52
UPF3A-202ENST00000375299 NLRP12P59046 1061 aa24.56■■□□□ 1.52
UPF3A-202ENST00000375299 ZMYM1Q5SVZ6 1142 aa24.56■■□□□ 1.52
UPF3A-202ENST00000375299 PAG1Q9NWQ8 432 aa24.56■■□□□ 1.52
UPF3A-202ENST00000375299 YEATS4O95619 227 aa24.56■■□□□ 1.52
UPF3A-202ENST00000375299 HSPD1P10809 573 aaKnown RBP24.56■■□□□ 1.52
UPF3A-202ENST00000375299 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.56■■□□□ 1.522e-6■■■■□ 23
UPF3A-202ENST00000375299 CLIC4Q9Y696 253 aa24.56■■□□□ 1.52
UPF3A-202ENST00000375299 SCN11AQ9UI33 1791 aa24.55■■□□□ 1.52
UPF3A-202ENST00000375299 CHST3Q7LGC8 479 aa24.55■■□□□ 1.52
UPF3A-202ENST00000375299 CREBRFQ8IUR6 639 aa24.55■■□□□ 1.52
UPF3A-202ENST00000375299 LRRN4CLQ8ND94 238 aa24.55■■□□□ 1.52
UPF3A-202ENST00000375299 ARFGEF2Q9Y6D5 1785 aa24.55■■□□□ 1.52
UPF3A-202ENST00000375299 POLR3EQ9NVU0 708 aa24.54■■□□□ 1.52
UPF3A-202ENST00000375299 CCDC9Q9Y3X0 531 aaKnown RBP24.54■■□□□ 1.52
UPF3A-202ENST00000375299 SLC3A2P08195 630 aaKnown RBP24.54■■□□□ 1.52
UPF3A-202ENST00000375299 NCAPHQ15003 741 aa24.54■■□□□ 1.52
UPF3A-202ENST00000375299 TICAM2Q86XR7 235 aa24.54■■□□□ 1.52
UPF3A-202ENST00000375299 ST7Q9NRC1 585 aa24.54■■□□□ 1.52
UPF3A-202ENST00000375299 ZC3H6P61129 1189 aaKnown RBP24.53■■□□□ 1.52
UPF3A-202ENST00000375299 LRP10Q7Z4F1 713 aa24.53■■□□□ 1.52
UPF3A-202ENST00000375299 SPTLC2O15270 562 aa24.53■■□□□ 1.52
UPF3A-202ENST00000375299 CLCN6P51797 869 aa24.53■■□□□ 1.52
UPF3A-202ENST00000375299 SYTL4Q96C24 671 aaPredicted RBP24.53■■□□□ 1.52
UPF3A-202ENST00000375299 SLC52A2Q9HAB3 445 aa24.53■■□□□ 1.52
UPF3A-202ENST00000375299 EVCP57679 992 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 FBXL16Q8N461 479 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 MAST3O60307 1309 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 KDM6AO15550 1401 aaPredicted RBP24.52■■□□□ 1.52
UPF3A-202ENST00000375299 C1orf167Q5SNV9 1468 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 BIN1O00499 593 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 CCP110O43303 1012 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 OTUD7BQ6GQQ9 843 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 RAPGEF4Q8WZA2 1011 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 C8orf76Q96K31 380 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 MST1RQ04912 1400 aa24.52■■□□□ 1.52
UPF3A-202ENST00000375299 KIF1AQ12756 1690 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 ZNF202O95125 648 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 FMNL2Q96PY5 1086 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 FHOD1Q9Y613 1164 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 PHLPP2Q6ZVD8 1323 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 A0A087WZG4 1122 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 POLR3DP05423 398 aaPredicted RBP24.51■■□□□ 1.51
UPF3A-202ENST00000375299 MYSM1Q5VVJ2 828 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 NEUROD6Q96NK8 337 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 ADAMTSL3P82987 1691 aa24.51■■□□□ 1.51
UPF3A-202ENST00000375299 IKBKBO14920 756 aa24.5■■□□□ 1.51
UPF3A-202ENST00000375299 ETF1P62495 437 aaKnown RBP24.5■■□□□ 1.51
UPF3A-202ENST00000375299 FANCCQ00597 558 aa24.5■■□□□ 1.51
UPF3A-202ENST00000375299 ARHGAP29Q52LW3 1261 aa24.5■■□□□ 1.51
UPF3A-202ENST00000375299 BRAPQ7Z569 592 aa24.5■■□□□ 1.51
UPF3A-202ENST00000375299 PROSER2Q86WR7 435 aaPredicted RBP24.5■■□□□ 1.51
UPF3A-202ENST00000375299 HOMER1Q86YM7 354 aa24.5■■□□□ 1.51
UPF3A-202ENST00000375299 A0A0U1RQG5 324 aaPredicted RBP24.5■■□□□ 1.51
UPF3A-202ENST00000375299 CASP7P55210 303 aa24.5■■□□□ 1.51
UPF3A-202ENST00000375299 NOL10Q9BSC4 688 aaKnown RBP24.5■■□□□ 1.51
UPF3A-202ENST00000375299 SPEF2Q9C093 1822 aa24.49■■□□□ 1.51
UPF3A-202ENST00000375299 NFATC2IPQ8NCF5 419 aa24.49■■□□□ 1.51
UPF3A-202ENST00000375299 NLRP2Q9NX02 1062 aa24.49■■□□□ 1.51
UPF3A-202ENST00000375299 ALS2Q96Q42 1657 aa24.49■■□□□ 1.51
UPF3A-202ENST00000375299 PHKG2P15735 406 aa24.49■■□□□ 1.51
UPF3A-202ENST00000375299 LMBR1LQ6UX01 489 aa24.49■■□□□ 1.51
UPF3A-202ENST00000375299 FBXO18Q8NFZ0 1043 aa24.49■■□□□ 1.51
UPF3A-202ENST00000375299 ZNF496Q96IT1 587 aaPredicted RBP24.49■■□□□ 1.51
UPF3A-202ENST00000375299 ATP5J2-PTCD1G3V325 749 aa24.48■■□□□ 1.51
UPF3A-202ENST00000375299 RNF113AO15541 343 aaKnown RBP24.48■■□□□ 1.51
UPF3A-202ENST00000375299 PTCD1O75127 700 aaKnown RBP24.48■■□□□ 1.51
UPF3A-202ENST00000375299 GPR108Q9NPR9 543 aa24.48■■□□□ 1.51
UPF3A-202ENST00000375299 DNAI1Q9UI46 699 aa24.48■■□□□ 1.51
UPF3A-202ENST00000375299 PFKFB1P16118 471 aa24.47■■□□□ 1.51
UPF3A-202ENST00000375299 LMOD1P29536 600 aaPredicted RBP24.47■■□□□ 1.51
UPF3A-202ENST00000375299 PIP4K2AP48426 406 aaPredicted RBP24.47■■□□□ 1.51
UPF3A-202ENST00000375299 TTLL5Q6EMB2 1281 aa24.47■■□□□ 1.51
UPF3A-202ENST00000375299 GPHNQ9NQX3 736 aaPredicted RBP24.47■■□□□ 1.51
UPF3A-202ENST00000375299 NWD2Q9ULI1 1742 aa24.47■■□□□ 1.51
UPF3A-202ENST00000375299 PNMA6AP0CW24 399 aaPredicted RBP24.47■■□□□ 1.51
UPF3A-202ENST00000375299 CMA1P23946 247 aa24.47■■□□□ 1.51
UPF3A-202ENST00000375299 AXDND1Q5T1B0 1012 aaPredicted RBP24.47■■□□□ 1.51
UPF3A-202ENST00000375299 ATG9AQ7Z3C6 839 aa24.47■■□□□ 1.51
UPF3A-202ENST00000375299 ARGLU1Q9NWB6 273 aaPredicted RBP24.47■■□□□ 1.51
UPF3A-202ENST00000375299 M0R2C6 588 aa24.46■■□□□ 1.51
UPF3A-202ENST00000375299 ANO1Q5XXA6 986 aa24.46■■□□□ 1.51
UPF3A-202ENST00000375299 SYNE3Q6ZMZ3 975 aa24.46■■□□□ 1.51
UPF3A-202ENST00000375299 ORC3Q9UBD5 711 aaPredicted RBP24.46■■□□□ 1.51
UPF3A-202ENST00000375299 ERICH4A6NGS2 130 aa24.46■■□□□ 1.51
UPF3A-202ENST00000375299 DHX16O60231 1041 aaKnown RBP24.46■■□□□ 1.51
UPF3A-202ENST00000375299 TATP17735 454 aaPredicted RBP24.46■■□□□ 1.51
UPF3A-202ENST00000375299 GORABQ5T7V8 394 aa24.46■■□□□ 1.51
UPF3A-202ENST00000375299 UBXN4Q92575 508 aa24.46■■□□□ 1.51
UPF3A-202ENST00000375299 HSD3B7Q9H2F3 369 aa24.46■■□□□ 1.51
UPF3A-202ENST00000375299 C19orf44Q9H6X5 657 aa24.46■■□□□ 1.51
UPF3A-202ENST00000375299 DDX60Q8IY21 1712 aaKnown RBP24.45■■□□□ 1.51
UPF3A-202ENST00000375299 SNRPA1P09661 255 aaKnown RBP24.45■■□□□ 1.51
UPF3A-202ENST00000375299 TIMM10P62072 90 aa24.45■■□□□ 1.51
UPF3A-202ENST00000375299 SRRTQ9BXP5 876 aaKnown RBP24.45■■□□□ 1.51
UPF3A-202ENST00000375299 MROH7-TTC4A0A0A0MT08 1334 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms