RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 ZKSCAN3Q9BRR0 538 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 EHD4Q9H223 541 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 DYRK1BQ9Y463 629 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 PPME1Q9Y570 386 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 DIAPH1O60610 1272 aaKnown RBP2.34□□□□□ -2.04
BRCA1-202ENST00000354071 HOXD8P13378 290 aaPredicted RBP2.34□□□□□ -2.04
BRCA1-202ENST00000354071 CES1P23141 567 aa2.34□□□□□ -2.04
BRCA1-202ENST00000354071 JAMLQ86YT9 394 aa2.34□□□□□ -2.04
BRCA1-202ENST00000354071 MRFAP1L1Q96HT8 127 aa2.34□□□□□ -2.04
BRCA1-202ENST00000354071 POLMQ9NP87 494 aaPredicted RBP2.34□□□□□ -2.04
BRCA1-202ENST00000354071 ABI2Q9NYB9 513 aaPredicted RBP2.34□□□□□ -2.04
BRCA1-202ENST00000354071 MMP20O60882 483 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 F13A1P00488 732 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 PCSK2P16519 638 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 PDE6BP35913 854 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 VEGFBP49765 207 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 ST13P50502 369 aaKnown RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 C6orf118Q5T5N4 469 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 C1orf53Q5VUE5 145 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 FBXW10Q5XX13 1052 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 VPS37DQ86XT2 251 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 GALNT12Q8IXK2 581 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 STK35Q8TDR2 534 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 NSUN5Q96P11 429 aaKnown RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 TCF12Q99081 682 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 TRIM55Q9BYV6 548 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 ARID4BQ4LE39 1312 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 FAM86C2PA6NEL3 165 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 FIGNL2A6NMB9 653 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 PPP1R12AO14974 1030 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 PEX14O75381 377 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 ITGA6P23229 1130 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 HSD3B2P26439 372 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 SOX9P48436 509 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 ARSDP51689 593 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 IGBP1P78318 339 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 PTPN11Q06124 597 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 PKDCCQ504Y2 493 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 CEP63Q96MT8 703 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 WASF2Q9Y6W5 498 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 TTC24A2A3L6 582 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 TERTO14746 1132 aaKnown RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 BNIP3LO60238 219 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 APOBRQ0VD83 1088 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 SFSWAPQ12872 951 aaKnown RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 CAMK2GQ13555 558 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 GRIK5Q16478 980 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 MRM1Q6IN84 353 aaKnown RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 PDE12Q6L8Q7 609 aaKnown RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 UBR7Q8N806 425 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 ZNF526Q8TF50 670 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 JARID2Q92833 1246 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-202ENST00000354071 SUV39H2Q9H5I1 410 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 ANKIB1Q9P2G1 1089 aa2.33□□□□□ -2.04
BRCA1-202ENST00000354071 DCDC2BA2VCK2 349 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 ZBTB42B2RXF5 422 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 GRIN3BO60391 1043 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 EGFRP00533 1210 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 CDKN1CP49918 316 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 MLLT1Q03111 559 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 CBX2Q14781 532 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 PLEKHG6Q3KR16 790 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 DALRD3Q5D0E6 543 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 PCNX4Q63HM2 1172 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 XKR5Q6UX68 686 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 TSR2Q969E8 191 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 LGR4Q9BXB1 951 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 BRD7Q9NPI1 651 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 THRAP3Q9Y2W1 955 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 NOP58Q9Y2X3 529 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 PPRC1Q5VV67 1664 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 HMGXB3Q12766 1538 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 A0A1W2PNR3 127 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 GREM1O60565 184 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 HCLS1P14317 486 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 LIG3P49916 1009 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 GYS2P54840 703 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 CHMP4BP1P59074 171 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 TNP2Q05952 138 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 LARP1BQ659C4 914 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 TMED8Q6PL24 325 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 GK5Q6ZS86 529 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 HFE2Q6ZVN8 426 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 GRIN3AQ8TCU5 1115 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 IER2Q9BTL4 223 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 NXF1Q9UBU9 619 aaKnown RBP2.32□□□□□ -2.04
BRCA1-202ENST00000354071 CD2APQ9Y5K6 639 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 CCDC180Q9P1Z9 1646 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 ENPP3O14638 875 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 GSTT1P30711 240 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 FGD1P98174 961 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 NBPF1Q3BBV0 1214 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 DTHD1Q6ZMT9 781 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 WHAMMQ8TF30 809 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 CPLX3Q8WVH0 158 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 IRF2BPLQ9H1B7 796 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 ZDHHC3Q9NYG2 299 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 PRR12Q9ULL5 1215 aa2.32□□□□□ -2.04
BRCA1-202ENST00000354071 MAPK8IP1Q9UQF2 711 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms