RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CLIC4Q9Y696 253 aa26.04■■□□□ 1.76
TRIM28-202ENST00000341753 ZRSR1Q15695 479 aaKnown RBP26.04■■□□□ 1.76
TRIM28-202ENST00000341753 GJB4Q9NTQ9 266 aa26.04■■□□□ 1.76
TRIM28-202ENST00000341753 COL18A1P39060 1754 aa26.04■■□□□ 1.76
TRIM28-202ENST00000341753 RFX5P48382 616 aaPredicted RBP26.03■■□□□ 1.76
TRIM28-202ENST00000341753 OSBPL5Q9H0X9 879 aaPredicted RBP26.03■■□□□ 1.76
TRIM28-202ENST00000341753 SF3A1Q15459 793 aaKnown RBP26.03■■□□□ 1.76
TRIM28-202ENST00000341753 HAUS7Q99871 368 aa26.03■■□□□ 1.76
TRIM28-202ENST00000341753 PDIA3P30101 505 aaKnown RBP26.02■■□□□ 1.76
TRIM28-202ENST00000341753 PTPN21Q16825 1174 aa26.02■■□□□ 1.76
TRIM28-202ENST00000341753 NEUROD6Q96NK8 337 aa26.02■■□□□ 1.76
TRIM28-202ENST00000341753 COPRSQ9NQ92 184 aa26.02■■□□□ 1.76
TRIM28-202ENST00000341753 FAM53CQ9NYF3 392 aa26.02■■□□□ 1.76
TRIM28-202ENST00000341753 SFPQP23246 707 aaKnown RBP eCLIP26.01■■□□□ 1.76
TRIM28-202ENST00000341753 TTLL5Q6EMB2 1281 aa26.01■■□□□ 1.76
TRIM28-202ENST00000341753 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.01■■□□□ 1.76
TRIM28-202ENST00000341753 KIAA1468Q9P260 1216 aa26.01■■□□□ 1.76
TRIM28-202ENST00000341753 A0A087WZG4 1122 aa26.01■■□□□ 1.75
TRIM28-202ENST00000341753 E7EWF7 191 aa26.01■■□□□ 1.75
TRIM28-202ENST00000341753 FDPSP14324 419 aaKnown RBP26.01■■□□□ 1.75
TRIM28-202ENST00000341753 STK38Q15208 465 aa26.01■■□□□ 1.75
TRIM28-202ENST00000341753 TOM1L2Q6ZVM7 507 aa26.01■■□□□ 1.75
TRIM28-202ENST00000341753 PRDM11Q9NQV5 511 aa26.01■■□□□ 1.75
TRIM28-202ENST00000341753 CARMIL3Q8ND23 1372 aa26.01■■□□□ 1.75
TRIM28-202ENST00000341753 LMOD1P29536 600 aaPredicted RBP26.01■■□□□ 1.75
TRIM28-202ENST00000341753 EXOSC10Q01780 885 aaKnown RBP26.01■■□□□ 1.75
TRIM28-202ENST00000341753 BRINP3Q76B58 766 aa26.01■■□□□ 1.75
TRIM28-202ENST00000341753 HOMER1Q86YM7 354 aa26.01■■□□□ 1.75
TRIM28-202ENST00000341753 SALL1Q9NSC2 1324 aa26■■□□□ 1.75
TRIM28-202ENST00000341753 NBPF26B4DH59 902 aa26■■□□□ 1.75
TRIM28-202ENST00000341753 CLCN6P51797 869 aa26■■□□□ 1.75
TRIM28-202ENST00000341753 NBPF14Q5TI25 921 aa26■■□□□ 1.75
TRIM28-202ENST00000341753 NBPF10Q6P3W6 841 aaKnown RBP26■■□□□ 1.75
TRIM28-202ENST00000341753 TTLL7Q6ZT98 887 aa26■■□□□ 1.75
TRIM28-202ENST00000341753 NBPF15Q8N660 670 aa26■■□□□ 1.75
TRIM28-202ENST00000341753 KBTBD3Q8NAB2 608 aa26■■□□□ 1.75
TRIM28-202ENST00000341753 HMGB1P09429 215 aaKnown RBP25.99■■□□□ 1.75
TRIM28-202ENST00000341753 ARHGAP29Q52LW3 1261 aa25.99■■□□□ 1.75
TRIM28-202ENST00000341753 GOLGA8FQ08AF8 430 aa25.99■■□□□ 1.75
TRIM28-202ENST00000341753 GOLGA8DPQ0D2H9 430 aa25.99■■□□□ 1.75
TRIM28-202ENST00000341753 TAF3Q5VWG9 929 aa25.99■■□□□ 1.75
TRIM28-202ENST00000341753 L2HGDHQ9H9P8 463 aa25.99■■□□□ 1.75
TRIM28-202ENST00000341753 A1BGP04217 495 aa25.98■■□□□ 1.75
TRIM28-202ENST00000341753 ADALQ6DHV7 355 aa25.98■■□□□ 1.75
TRIM28-202ENST00000341753 IMPACTQ9P2X3 320 aa25.98■■□□□ 1.75
TRIM28-202ENST00000341753 KIF2AO00139 706 aaPredicted RBP25.98■■□□□ 1.75
TRIM28-202ENST00000341753 ATP1A3P13637 1013 aa25.98■■□□□ 1.75
TRIM28-202ENST00000341753 H2AFXP16104 143 aaPredicted RBP25.98■■□□□ 1.75
TRIM28-202ENST00000341753 LINC00301Q8NCQ3 95 aa25.98■■□□□ 1.75
TRIM28-202ENST00000341753 STRN4Q9NRL3 753 aa25.98■■□□□ 1.75
TRIM28-202ENST00000341753 DNAI1Q9UI46 699 aa25.98■■□□□ 1.75
TRIM28-202ENST00000341753 MRC1P22897 1456 aa25.97■■□□□ 1.75
TRIM28-202ENST00000341753 TIMM10P62072 90 aa25.97■■□□□ 1.75
TRIM28-202ENST00000341753 KCND1Q9NSA2 647 aa25.97■■□□□ 1.75
TRIM28-202ENST00000341753 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.97■■□□□ 1.751e-9■■■■□ 19.9
TRIM28-202ENST00000341753 CCDC150Q8NCX0 1101 aa25.97■■□□□ 1.75
TRIM28-202ENST00000341753 RTEL1Q9NZ71 1219 aa25.97■■□□□ 1.75
TRIM28-202ENST00000341753 NEDD4P46934 1319 aa25.97■■□□□ 1.75
TRIM28-202ENST00000341753 HSPD1P10809 573 aaKnown RBP25.96■■□□□ 1.75
TRIM28-202ENST00000341753 FHOD1Q9Y613 1164 aa25.96■■□□□ 1.75
TRIM28-202ENST00000341753 SLC3A2P08195 630 aaKnown RBP25.96■■□□□ 1.75
TRIM28-202ENST00000341753 HAND2P61296 217 aa25.96■■□□□ 1.75
TRIM28-202ENST00000341753 CCDC93Q567U6 631 aa25.96■■□□□ 1.75
TRIM28-202ENST00000341753 PAG1Q9NWQ8 432 aa25.96■■□□□ 1.75
TRIM28-202ENST00000341753 MYH15Q9Y2K3 1946 aa25.95■■□□□ 1.75
TRIM28-202ENST00000341753 ATL3Q6DD88 541 aa25.95■■□□□ 1.74
TRIM28-202ENST00000341753 LMBR1LQ6UX01 489 aa25.95■■□□□ 1.74
TRIM28-202ENST00000341753 NOL10Q9BSC4 688 aaKnown RBP25.95■■□□□ 1.74
TRIM28-202ENST00000341753 ZBTB3Q9H5J0 574 aa25.95■■□□□ 1.74
TRIM28-202ENST00000341753 SH3TC1Q8TE82 1336 aa25.95■■□□□ 1.74
TRIM28-202ENST00000341753 BMS1Q14692 1282 aaKnown RBP25.94■■□□□ 1.74
TRIM28-202ENST00000341753 NCAPHQ15003 741 aa25.94■■□□□ 1.74
TRIM28-202ENST00000341753 ZNF330Q9Y3S2 320 aaPredicted RBP25.94■■□□□ 1.74
TRIM28-202ENST00000341753 AGXT2Q9BYV1 514 aa25.94■■□□□ 1.74
TRIM28-202ENST00000341753 ZNF202O95125 648 aa25.94■■□□□ 1.74
TRIM28-202ENST00000341753 FAM177A1Q8N128 213 aaPredicted RBP25.94■■□□□ 1.74
TRIM28-202ENST00000341753 ZCRB1Q8TBF4 217 aaKnown RBP25.94■■□□□ 1.74
TRIM28-202ENST00000341753 LAMA4Q16363 1823 aa25.93■■□□□ 1.74
TRIM28-202ENST00000341753 PSDA5PKW4 1024 aaPredicted RBP25.93■■□□□ 1.74
TRIM28-202ENST00000341753 SPTLC2O15270 562 aa25.93■■□□□ 1.74
TRIM28-202ENST00000341753 FANCCQ00597 558 aa25.93■■□□□ 1.74
TRIM28-202ENST00000341753 DPF2Q92785 391 aa25.93■■□□□ 1.74
TRIM28-202ENST00000341753 C8orf76Q96K31 380 aa25.93■■□□□ 1.74
TRIM28-202ENST00000341753 EPC1Q9H2F5 836 aa25.93■■□□□ 1.74
TRIM28-202ENST00000341753 MARCKSP29966 332 aaPredicted RBP25.93■■□□□ 1.74
TRIM28-202ENST00000341753 A0A1W2PQ27 194 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 A0A1W2PQ64 194 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 A0A1W2PQD8 194 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 CCDC66A2RUB6 948 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 FANCGO15287 622 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 PNMA6AP0CW24 399 aaPredicted RBP25.92■■□□□ 1.74
TRIM28-202ENST00000341753 TMX1Q9H3N1 280 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 MAST3O60307 1309 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 KIF28PB7ZC32 967 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 BBXQ8WY36 941 aaPredicted RBP25.92■■□□□ 1.74
TRIM28-202ENST00000341753 ZNF274Q96GC6 653 aaPredicted RBP25.92■■□□□ 1.74
TRIM28-202ENST00000341753 TRERF1Q96PN7 1200 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 DSCC1Q9BVC3 393 aa25.92■■□□□ 1.74
TRIM28-202ENST00000341753 LMTK3Q96Q04 1460 aa25.91■■□□□ 1.74
TRIM28-202ENST00000341753 NLRP12P59046 1061 aa25.91■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms