RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 PTPDC1A2A3K4 754 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 KRT2P35908 639 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 TMTC2Q8N394 836 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 RRP36Q96EU6 259 aaKnown RBP11.61□□□□□ -0.55
CHD3-201ENST00000330494 DBNDD2Q9BQY9 259 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 ZRSR2Q15696 482 aaKnown RBP11.61□□□□□ -0.55
CHD3-201ENST00000330494 CNBD1Q8NA66 436 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 SNW1Q13573 536 aaKnown RBP11.61□□□□□ -0.55
CHD3-201ENST00000330494 KANK3Q6NY19 840 aa11.61□□□□□ -0.55
CHD3-201ENST00000330494 KIF20AO95235 890 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 CETN1Q12798 172 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 TTC41PQ6P2S7 1318 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 PNMA6EA0A0J9YXQ4 647 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 PER1O15534 1290 aaPredicted RBP11.6□□□□□ -0.55
CHD3-201ENST00000330494 LRSAM1Q6UWE0 723 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 SUCLG2Q96I99 432 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 AATFQ9NY61 560 aaKnown RBP eCLIP11.6□□□□□ -0.556e-17■■■□□ 16
CHD3-201ENST00000330494 GOLGA6L7A0A1B0GV03 622 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 TMEM110-MUSTN1A8MSY1 372 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 KCNQ3O43525 872 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 LMOD1P29536 600 aaPredicted RBP11.6□□□□□ -0.55
CHD3-201ENST00000330494 PAFAH1B1P43034 410 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 METTL22Q9BUU2 404 aaPredicted RBP11.6□□□□□ -0.55
CHD3-201ENST00000330494 NCOA5Q9HCD5 579 aaKnown RBP11.6□□□□□ -0.55
CHD3-201ENST00000330494 KDM5AP29375 1690 aaKnown RBP11.6□□□□□ -0.55
CHD3-201ENST00000330494 KCNG4Q8TDN1 519 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 MRPS27Q92552 414 aaKnown RBP11.6□□□□□ -0.55
CHD3-201ENST00000330494 XAGE2Q96GT9 111 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 RBM17Q96I25 401 aaKnown RBP11.6□□□□□ -0.55
CHD3-201ENST00000330494 RTL1A6NKG5 1358 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 PLBD2Q8NHP8 589 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 SLC52A2Q9HAB3 445 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 CALCOCO1Q9P1Z2 691 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 MYO5CQ9NQX4 1742 aa11.6□□□□□ -0.55
CHD3-201ENST00000330494 PRKG1Q13976 671 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 TNNI3KQ59H18 835 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 CCDC174Q6PII3 467 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 ZNF526Q8TF50 670 aaPredicted RBP11.59□□□□□ -0.55
CHD3-201ENST00000330494 FPGT-TNNI3KV9GXZ4 949 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 PIK3C2GO75747 1445 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 SPDYE3A6NKU9 549 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 ZNF174Q15697 407 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 FAM114A1Q8IWE2 563 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 PRDM1O75626 825 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 CTDSPL2Q05D32 466 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 TCP10Q12799 353 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 KLHL40Q2TBA0 621 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 MSL1Q68DK7 614 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 CEP170Q5SW79 1584 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 SPTLC2O15270 562 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 GJC1P36383 396 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 GNG11P61952 73 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 DNAJC10Q8IXB1 793 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 ZNF408Q9H9D4 720 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 EDC4Q6P2E9 1401 aaKnown RBP11.59□□□□□ -0.55
CHD3-201ENST00000330494 STXBP4Q6ZWJ1 553 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 TEX11Q8IYF3 940 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 JDP2Q8WYK2 163 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 USP26Q9BXU7 913 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 ATP10AO60312 1499 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 MYL10Q9BUA6 226 aa11.59□□□□□ -0.55
CHD3-201ENST00000330494 PHACTR2O75167 634 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 POLD1P28340 1107 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 SPECC1Q5M775 1068 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 CEP135Q66GS9 1140 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 SBNO1A3KN83 1393 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 UBE4AQ14139 1066 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 ERMNQ8TAM6 284 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 TBX22Q9Y458 520 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 DHX32Q7L7V1 743 aaKnown RBP11.58□□□□□ -0.56
CHD3-201ENST00000330494 MRVI1Q9Y6F6 885 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 TRIM75PA6NK02 468 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 C6orf50Q9HD87 102 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 GNAT2P19087 354 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 GSDMDP57764 484 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 ALS2CR12Q96Q35 445 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 PPP4R3BQ5MIZ7 849 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 ANKRD2Q9GZV1 360 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 INCENPQ9NQS7 918 aa11.58□□□□□ -0.56
CHD3-201ENST00000330494 SHANK2Q9UPX8 1470 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 A0A1B0GVL5 298 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 hCG_1642624A0A1W2PR95 340 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 VWA3AA6NCI4 1184 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 EDC3Q96F86 508 aaKnown RBP11.57□□□□□ -0.56
CHD3-201ENST00000330494 ZFP91Q96JP5 570 aaPredicted RBP11.57□□□□□ -0.56
CHD3-201ENST00000330494 WDR70Q9NW82 654 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 RMND1Q9NWS8 449 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 RTL9Q8NET4 1388 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 HIBADHP31937 336 aaKnown RBP11.57□□□□□ -0.56
CHD3-201ENST00000330494 MAP2K1Q02750 393 aaPredicted RBP11.57□□□□□ -0.56
CHD3-201ENST00000330494 DNAI2Q9GZS0 605 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 SYNCQ9H7C4 482 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 GNAQP50148 359 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 TCHPQ9BT92 498 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 SLC27A2O14975 620 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 LETM2Q2VYF4 491 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 CHMP2AO43633 222 aa11.57□□□□□ -0.56
CHD3-201ENST00000330494 FAM170AA1A519 330 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 AKR1B10O60218 316 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 LTKP29376 864 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms