RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 EFCAB13Q8IY85 973 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 PI4KAP2A4QPH2 592 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 ZMYND10O75800 440 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 ATP2B2Q01814 1243 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 GBP6Q6ZN66 633 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 PI4KAP1Q8N8J0 262 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 PUS7Q96PZ0 661 aaKnown RBP11.69□□□□□ -0.54
CLDN1-201ENST00000295522 SAMM50Q9Y512 469 aa11.69□□□□□ -0.54
CLDN1-201ENST00000295522 YTHDC2Q9H6S0 1430 aaKnown RBP11.68□□□□□ -0.54
CLDN1-201ENST00000295522 EBAG9O00559 213 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 ZNF202O95125 648 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 MAP3K9P80192 1104 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 PLEKHO1Q53GL0 409 aaPredicted RBP11.68□□□□□ -0.54
CLDN1-201ENST00000295522 PSD3Q9NYI0 1048 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 RCOR1Q9UKL0 485 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 CHGBP05060 677 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 USP8P40818 1118 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 VSNL1P62760 191 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 PSME1Q06323 249 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 MAP4K1Q92918 833 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 CLIC4Q9Y696 253 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 TRMT44Q8IYL2 757 aaKnown RBP11.68□□□□□ -0.54
CLDN1-201ENST00000295522 CRACR2AQ9BSW2 395 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 GJB4Q9NTQ9 266 aa11.68□□□□□ -0.54
CLDN1-201ENST00000295522 FRMD3A2A2Y4 597 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 CTAGE15A4D2H0 777 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 CTAGE8P0CG41 777 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 MYL5Q02045 173 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 PNOCQ13519 176 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 SRGAP1Q7Z6B7 1085 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 CTAGE6Q86UF2 777 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 CTAGE4Q8IX94 777 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 NUDT16Q96DE0 195 aaKnown RBP11.67□□□□□ -0.54
CLDN1-201ENST00000295522 A0A087WUV0 522 aaPredicted RBP11.67□□□□□ -0.54
CLDN1-201ENST00000295522 PPFIA4O75335 1185 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 NLRP12P59046 1061 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 KLHL10Q6JEL2 608 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 KLHDC4Q8TBB5 520 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 CAPN7Q9Y6W3 813 aa11.67□□□□□ -0.54
CLDN1-201ENST00000295522 CPLX1O14810 134 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 SPTLC2O15270 562 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 CCDC175P0C221 793 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 TLR7Q9NYK1 1049 aaKnown RBP11.66□□□□□ -0.54
CLDN1-201ENST00000295522 GOLGA6L9A6NEM1 432 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 SOWAHDA6NJG2 315 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 KIAA0754O94854 1291 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 INPP5BP32019 993 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 AIMP1Q12904 312 aaKnown RBP11.66□□□□□ -0.54
CLDN1-201ENST00000295522 BEND6Q5SZJ8 279 aaPredicted RBP11.66□□□□□ -0.54
CLDN1-201ENST00000295522 CAPZA3Q96KX2 299 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 FAM107BQ9H098 131 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 POLD4Q9HCU8 107 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 KCNG1Q9UIX4 513 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 SHTN1A0MZ66 631 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 HIP1O00291 1037 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 PES1O00541 588 aaKnown RBP11.66□□□□□ -0.54
CLDN1-201ENST00000295522 SYKP43405 635 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 RNF187Q5TA31 235 aaPredicted RBP11.66□□□□□ -0.54
CLDN1-201ENST00000295522 RPAINQ86UA6 219 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 FMR1NBQ8N0W7 255 aaPredicted RBP11.66□□□□□ -0.54
CLDN1-201ENST00000295522 CEP112Q8N8E3 955 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 FAM71BQ8TC56 605 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 ZNF622Q969S3 477 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLDN1-201ENST00000295522 UBXN6Q9BZV1 441 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 SLC24A3Q9HC58 644 aa11.66□□□□□ -0.54
CLDN1-201ENST00000295522 TET3O43151 1660 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 A0A0U1RQJ8 604 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 SSBP05455 408 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLDN1-201ENST00000295522 PDE6BP35913 854 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 AMPHP49418 695 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 ZNF827Q17R98 1081 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 SPECC1Q5M775 1068 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 RSRC2Q7L4I2 434 aaKnown RBP11.65□□□□□ -0.54
CLDN1-201ENST00000295522 PPFIBP1Q86W92 1011 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 CEP57Q86XR8 500 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 ENGASEQ8NFI3 743 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 BCAS4Q8TDM0 211 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 ATRIPQ8WXE1 791 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 GBP3Q9H0R5 595 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 KIF1BO60333 1816 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 CUTAO60888 179 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 EIF5P55010 431 aaKnown RBP11.65□□□□□ -0.54
CLDN1-201ENST00000295522 TSGA10IPQ3SY00 556 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 GSPT2Q8IYD1 628 aaKnown RBP11.65□□□□□ -0.54
CLDN1-201ENST00000295522 CAGE1Q8TC20 777 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 C8orf76Q96K31 380 aa11.65□□□□□ -0.54
CLDN1-201ENST00000295522 CDC5LQ99459 802 aaKnown RBP11.65□□□□□ -0.54
CLDN1-201ENST00000295522 MRPL44Q9H9J2 332 aaKnown RBP11.65□□□□□ -0.54
CLDN1-201ENST00000295522 CTAGE9A4FU28 777 aa11.65□□□□□ -0.55
CLDN1-201ENST00000295522 EHD4Q9H223 541 aa11.65□□□□□ -0.55
CLDN1-201ENST00000295522 FAM169AQ9Y6X4 670 aa11.65□□□□□ -0.55
CLDN1-201ENST00000295522 ADCY9O60503 1353 aa11.64□□□□□ -0.55
CLDN1-201ENST00000295522 AATKQ6ZMQ8 1374 aa11.64□□□□□ -0.55
CLDN1-201ENST00000295522 PFKFB1P16118 471 aa11.64□□□□□ -0.55
CLDN1-201ENST00000295522 HNRNPH1P31943 449 aaKnown RBP11.64□□□□□ -0.55
CLDN1-201ENST00000295522 KRT32Q14532 448 aa11.64□□□□□ -0.55
CLDN1-201ENST00000295522 VSTM4Q8IW00 320 aa11.64□□□□□ -0.55
CLDN1-201ENST00000295522 IL17RAQ96F46 866 aa11.64□□□□□ -0.55
CLDN1-201ENST00000295522 CLIC6Q96NY7 704 aa11.64□□□□□ -0.55
CLDN1-201ENST00000295522 ANKZF1Q9H8Y5 726 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms