RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 GPR161Q8N6U8 529 aaKnown RBP15.2■□□□□ 0.02
NUP54-201ENST00000264883 TMC6Q7Z403 805 aa15.2■□□□□ 0.02
NUP54-201ENST00000264883 DDX54Q8TDD1 881 aaKnown RBP15.2■□□□□ 0.02
NUP54-201ENST00000264883 FUT8Q9BYC5 575 aa15.2■□□□□ 0.02
NUP54-201ENST00000264883 RFX7Q2KHR2 1363 aa15.2■□□□□ 0.02
NUP54-201ENST00000264883 AHDC1Q5TGY3 1603 aaPredicted RBP15.2■□□□□ 0.02
NUP54-201ENST00000264883 MED23Q9ULK4 1368 aa15.19■□□□□ 0.02
NUP54-201ENST00000264883 SMC2O95347 1197 aa15.19■□□□□ 0.02
NUP54-201ENST00000264883 EIF2S2P20042 333 aaKnown RBP15.19■□□□□ 0.02
NUP54-201ENST00000264883 CEP57L1Q8IYX8 460 aa15.19■□□□□ 0.02
NUP54-201ENST00000264883 ZSCAN16Q9H4T2 348 aaPredicted RBP15.19■□□□□ 0.02
NUP54-201ENST00000264883 EIF3CLB5ME19 914 aaKnown RBP15.19■□□□□ 0.02
NUP54-201ENST00000264883 DHX8Q14562 1220 aaKnown RBP15.19■□□□□ 0.02
NUP54-201ENST00000264883 EIF3CQ99613 913 aaKnown RBP15.19■□□□□ 0.02
NUP54-201ENST00000264883 C9orf78Q9NZ63 289 aaPredicted RBP15.19■□□□□ 0.02
NUP54-201ENST00000264883 UTYO14607 1347 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 A0A087WWV3 80 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 H3BQF6 201 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 GNL2Q13823 731 aaKnown RBP15.18■□□□□ 0.02
NUP54-201ENST00000264883 SART3Q15020 963 aaKnown RBP15.18■□□□□ 0.02
NUP54-201ENST00000264883 TRIM65Q6PJ69 517 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 AACSQ86V21 672 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 PPM1EQ8WY54 764 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 NAT10Q9H0A0 1025 aaKnown RBP15.18■□□□□ 0.02
NUP54-201ENST00000264883 CFAP45Q9UL16 551 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 MRC1P22897 1456 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 NMIQ13287 307 aaPredicted RBP15.18■□□□□ 0.02
NUP54-201ENST00000264883 CHRNA2Q15822 529 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 KSR2Q6VAB6 950 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 PARP3Q9Y6F1 533 aa15.18■□□□□ 0.02
NUP54-201ENST00000264883 UBAP1LF5GYI3 381 aa15.17■□□□□ 0.02
NUP54-201ENST00000264883 MYCNP04198 464 aaPredicted RBP15.17■□□□□ 0.02
NUP54-201ENST00000264883 XPO4Q9C0E2 1151 aaKnown RBP15.17■□□□□ 0.02
NUP54-201ENST00000264883 G3BP1Q13283 466 aaKnown RBP eCLIP15.17■□□□□ 0.02
NUP54-201ENST00000264883 AMOTQ4VCS5 1084 aa15.17■□□□□ 0.02
NUP54-201ENST00000264883 AKAP4Q5JQC9 854 aa15.17■□□□□ 0.02
NUP54-201ENST00000264883 CCAR1Q8IX12 1150 aaKnown RBP15.17■□□□□ 0.02
NUP54-201ENST00000264883 VPS18Q9P253 973 aa15.17■□□□□ 0.02
NUP54-201ENST00000264883 RPS6KA5O75582 802 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 BRD2P25440 801 aaKnown RBP15.16■□□□□ 0.02
NUP54-201ENST00000264883 TEFQ10587 303 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 PLEKHO1Q53GL0 409 aaPredicted RBP15.16■□□□□ 0.02
NUP54-201ENST00000264883 ATL3Q6DD88 541 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 PARD6BQ9BYG5 372 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 IFNKQ9P0W0 207 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 FANCGO15287 622 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 PRR29P0C7W0 189 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 USPL1Q5W0Q7 1092 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 FOXR1Q6PIV2 292 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 LINS1Q8NG48 757 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 FBXW7Q969H0 707 aa15.16■□□□□ 0.02
NUP54-201ENST00000264883 KINO60870 393 aaKnown RBP15.15■□□□□ 0.02
NUP54-201ENST00000264883 DDX58O95786 925 aaKnown RBP15.15■□□□□ 0.02
NUP54-201ENST00000264883 TOB2Q14106 344 aaPredicted RBP15.15■□□□□ 0.02
NUP54-201ENST00000264883 LONRF2Q1L5Z9 754 aa15.15■□□□□ 0.02
NUP54-201ENST00000264883 CCDC73Q6ZRK6 1079 aa15.15■□□□□ 0.02
NUP54-201ENST00000264883 CCDC91Q7Z6B0 441 aa15.15■□□□□ 0.02
NUP54-201ENST00000264883 LLPHQ9BRT6 129 aaKnown RBP15.15■□□□□ 0.02
NUP54-201ENST00000264883 ADAMTS7Q9UKP4 1686 aa15.15■□□□□ 0.02
NUP54-201ENST00000264883 BTBD11A6QL63 1104 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 CORO7P57737 925 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 RESTQ13127 1097 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 CT47A1Q5JQC4 288 aaPredicted RBP15.14■□□□□ 0.01
NUP54-201ENST00000264883 SUGP1Q8IWZ8 645 aaKnown RBP15.14■□□□□ 0.01
NUP54-201ENST00000264883 ZNF622Q969S3 477 aaKnown RBP eCLIP15.14■□□□□ 0.01
NUP54-201ENST00000264883 FSD1Q9BTV5 496 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 MAP3K2Q9Y2U5 619 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 CCDC172P0C7W6 258 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 CEBPZQ03701 1054 aaKnown RBP15.14■□□□□ 0.01
NUP54-201ENST00000264883 PPP2R3AQ06190 1150 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 JAKMIP3Q5VZ66 844 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 RSRC2Q7L4I2 434 aaKnown RBP15.14■□□□□ 0.01
NUP54-201ENST00000264883 RABGGTAQ92696 567 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 FAM227BQ96M60 508 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 GOLPH3LQ9H4A5 285 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 MKRN1Q9UHC7 482 aaKnown RBP15.14■□□□□ 0.01
NUP54-201ENST00000264883 CEP83Q9Y592 693 aa15.14■□□□□ 0.01
NUP54-201ENST00000264883 GRM8O00222 908 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 MAP2K7O14733 419 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 E2F4Q16254 413 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 ZNF530Q6P9A1 599 aaPredicted RBP15.13■□□□□ 0.01
NUP54-201ENST00000264883 TICAM2Q86XR7 235 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 PRDM11Q9NQV5 511 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 NLRP2Q9NX02 1062 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 HEG1Q9ULI3 1381 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 MEGF6O75095 1541 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 PHLPP1O60346 1717 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 BANK1Q8NDB2 785 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 MPHOSPH8Q99549 860 aa15.13■□□□□ 0.01
NUP54-201ENST00000264883 COL5A2P05997 1499 aaPredicted RBP15.13■□□□□ 0.01
NUP54-201ENST00000264883 COL22A1Q8NFW1 1626 aaPredicted RBP15.13■□□□□ 0.01
NUP54-201ENST00000264883 CCDC151A5D8V7 595 aa15.12■□□□□ 0.01
NUP54-201ENST00000264883 SASH1O94885 1247 aa15.12■□□□□ 0.01
NUP54-201ENST00000264883 MAP3K9P80192 1104 aa15.12■□□□□ 0.01
NUP54-201ENST00000264883 APOBRQ0VD83 1088 aa15.12■□□□□ 0.01
NUP54-201ENST00000264883 STK3Q13188 491 aa15.12■□□□□ 0.01
NUP54-201ENST00000264883 SWT1Q5T5J6 900 aaKnown RBP15.12■□□□□ 0.01
NUP54-201ENST00000264883 MCTP2Q6DN12 878 aa15.12■□□□□ 0.01
NUP54-201ENST00000264883 PDE11AQ9HCR9 933 aa15.12■□□□□ 0.01
NUP54-201ENST00000264883 U3KPZ7 1027 aaPredicted RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms