RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ABHD12Q8N2K0 398 aa15.37■□□□□ 0.05
CCDC28A-203ENST00000617445 TSEN15Q8WW01 171 aaKnown RBP15.37■□□□□ 0.05
CCDC28A-203ENST00000617445 PDCD1LG2Q9BQ51 273 aa15.37■□□□□ 0.05
CCDC28A-203ENST00000617445 ZNF702PQ9H963 129 aa15.37■□□□□ 0.05
CCDC28A-203ENST00000617445 SMPD3Q9NY59 655 aaPredicted RBP15.37■□□□□ 0.05
CCDC28A-203ENST00000617445 DPM3Q9P2X0 92 aa15.37■□□□□ 0.05
CCDC28A-203ENST00000617445 HILPDAQ9Y5L2 63 aa15.37■□□□□ 0.05
CCDC28A-203ENST00000617445 CMYA5Q8N3K9 4069 aa15.37■□□□□ 0.05
CCDC28A-203ENST00000617445 MEGF11A6BM72 1044 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 E9PI62 339 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 SLC33A1O00400 549 aaPredicted RBP15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 ALDOBP05062 364 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 CD2P06729 351 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 CD34P28906 385 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 BDH1Q02338 343 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 SLC34A1Q06495 639 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 SCN1BQ07699 218 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 AESQ08117 197 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 ZSCAN26Q16670 478 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 ZNF529Q6P280 563 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 RPL22L1Q6P5R6 122 aaKnown RBP15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 TMPRSS11AQ6ZMR5 421 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 C16orf82Q7Z2V1 217 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 FAM110DQ8TAY7 271 aaPredicted RBP15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 APH1BQ8WW43 257 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 NCOR1P1Q9H4R4 102 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 C8orf4Q9NR00 106 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 OR6C3Q9NZP0 311 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 FOXJ3Q9UPW0 622 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 TGP01266 2768 aa15.36■□□□□ 0.05
CCDC28A-203ENST00000617445 ODAMA1E959 279 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 FAM90A22PA8MWA6 464 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 BAG2O95816 211 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 LIMS3P0CW19 117 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 LIMS4P0CW20 117 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 VSIG10L2P0DP72 767 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 CDK2P24941 298 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 BRS3P32247 399 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 GLIPR1P48060 266 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 KRBOX4Q5JUW0 171 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 RNF144BQ7Z419 303 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 ZNF565Q8N9K5 539 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 OR4D6Q8NGJ1 314 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 OR4P4Q8NGL7 312 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 GPR148Q8TDV2 347 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 STMN2Q93045 179 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 SERTAD4Q9NUC0 356 aa15.35■□□□□ 0.05
CCDC28A-203ENST00000617445 ZNF729A6NN14 1252 aaPredicted RBP15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 LEUTXA8MZ59 168 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 WBP4O75554 376 aaKnown RBP15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 MMP23AO75900 390 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 CEACAM3P40198 252 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 PTGFRP43088 359 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 PRRX1P54821 245 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 EMX1Q04741 257 aaPredicted RBP15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 CDK5R1Q15078 307 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 TMEM219Q86XT9 240 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 Q8NFD4 153 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 OR51T1Q8NGJ9 327 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 AKR1E2Q96JD6 320 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 GPER1Q99527 375 aa15.34■□□□□ 0.05
CCDC28A-203ENST00000617445 NOTCH3Q9UM47 2321 aa15.33■□□□□ 0.05
CCDC28A-203ENST00000617445 A0A087X0M5 115 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 A0A1B0GX30 115 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 TOR1AO14656 332 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 PEX14O75381 377 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 IGLV1-47P01700 117 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 OPN1MWP04001 364 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 OPN1MW2P0DN77 364 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 OPN1MW3P0DN78 364 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 KCNJ3P48549 501 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 MED21Q13503 144 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 IL13RA2Q14627 380 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 PRAMEF5Q5TYX0 476 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 TTC23Q5W5X9 447 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 COQ2Q96H96 371 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 BARHL1Q9BZE3 327 aa15.33■□□□□ 0.04
CCDC28A-203ENST00000617445 H0YJX3 145 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 FBXO24O75426 580 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 MYL12AP19105 171 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 GTF2A1P52655 376 aaPredicted RBP15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 PAX5Q02548 391 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 CCDC144NLQ6NUI1 221 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 ASCL4Q6XD76 172 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 SATL1Q86VE3 508 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 SETD9Q8NE22 299 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 TNFAIP8L1Q8WVP5 186 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 LIN7BQ9HAP6 207 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 BABAM2Q9NXR7 383 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 DIMT1Q9UNQ2 313 aaKnown RBP15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 EXOSC1Q9Y3B2 195 aaKnown RBP15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 PLXNB1O43157 2135 aa15.32■□□□□ 0.04
CCDC28A-203ENST00000617445 KBTBD11-OT1A0A1B0GTJ5 212 aa15.31■□□□□ 0.04
CCDC28A-203ENST00000617445 OOSP1A8MZH6 123 aa15.31■□□□□ 0.04
CCDC28A-203ENST00000617445 OGG1O15527 345 aa15.31■□□□□ 0.04
CCDC28A-203ENST00000617445 C21orf33P30042 268 aaPredicted RBP15.31■□□□□ 0.04
CCDC28A-203ENST00000617445 ETV1P50549 477 aa15.31■□□□□ 0.04
CCDC28A-203ENST00000617445 RSU1Q15404 277 aa15.31■□□□□ 0.04
CCDC28A-203ENST00000617445 SMN1Q16637 294 aaKnown RBP15.31■□□□□ 0.04
CCDC28A-203ENST00000617445 PAN3Q58A45 887 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 205.3 ms