RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 NGFP01138 241 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 P2RY1P47900 373 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 SULT1A2P50226 295 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 TGFBR3Q03167 851 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 PJVKQ0ZLH3 352 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 C3AR1Q16581 482 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 TBC1D28Q2M2D7 210 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 SP6Q3SY56 376 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 RPL7L1Q6DKI1 246 aaKnown RBP12.73□□□□□ -0.37
NUP54-217ENST00000514987 LDLRAD3Q86YD5 345 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 UBAC2Q8NBM4 344 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 NARS2Q96I59 477 aaKnown RBP12.73□□□□□ -0.37
NUP54-217ENST00000514987 ABHD14BQ96IU4 210 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 MICU1Q9BPX6 476 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 FGF23Q9GZV9 251 aaPredicted RBP12.73□□□□□ -0.37
NUP54-217ENST00000514987 ATP23Q9Y6H3 246 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 CNTRLQ7Z7A1 2325 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 GPR31O00270 319 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 ST8SIA3O43173 380 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 SLC34A2O95436 690 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 MBPP02686 304 aaPredicted RBP12.73□□□□□ -0.37
NUP54-217ENST00000514987 IL32P24001 234 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 TMEM33P57088 247 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 SPEM2Q0P670 501 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 ZNF273Q14593 569 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 PDCD1Q15116 288 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 TMEM268Q5VZI3 342 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 LYZL2Q7Z4W2 148 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 NEK7Q8TDX7 302 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 LRRC46Q96FV0 321 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 TMEM222Q9H0R3 208 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 ZNF552Q9H707 407 aaPredicted RBP12.73□□□□□ -0.37
NUP54-217ENST00000514987 FBXL17Q9UF56 701 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 LHX6Q9UPM6 363 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 AMDHD2Q9Y303 409 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 LIPGQ9Y5X9 500 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 POMT1Q9Y6A1 747 aa12.73□□□□□ -0.37
NUP54-217ENST00000514987 ARHGAP21Q5T5U3 1957 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 J3QT63 122 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 TUSC2O75896 110 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 ATG12O94817 140 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 SCGB1D2O95969 90 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 PRKACAP17612 351 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 S100GP29377 79 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 WNT5AP41221 380 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 DEFA5Q01523 94 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 HIKESHIQ53FT3 197 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 HAGHLQ6PII5 290 aaPredicted RBP12.72□□□□□ -0.37
NUP54-217ENST00000514987 FBXW12Q6X9E4 464 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 Q6ZPA2 131 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 P4HA3Q7Z4N8 544 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 MDP1Q86V88 176 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 Q8IYB0 196 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 SPAG16Q8N0X2 631 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 SVBPQ8N300 66 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 TMEM56Q96MV1 263 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 RTL8AQ9BWD3 113 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 ARV1Q9H2C2 271 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 C12orf49Q9H741 205 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 PARP11Q9NR21 331 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 COQ3Q9NZJ6 369 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 SPRR3Q9UBC9 169 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 ZNF629Q9UEG4 869 aaPredicted RBP12.72□□□□□ -0.37
NUP54-217ENST00000514987 TMEM56-RWDD3S4R434 201 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 SPEGQ15772 3267 aa12.72□□□□□ -0.37
NUP54-217ENST00000514987 TSPAN4O14817 238 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 HOXB1P14653 301 aaPredicted RBP12.71□□□□□ -0.37
NUP54-217ENST00000514987 KCNJ3P48549 501 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 TNFSF10P50591 281 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 GNMTQ14749 295 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 TGIF1Q15583 401 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 IGSF11Q5DX21 431 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 C10orf91Q5T1B1 145 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 OR2A2Q6IF42 318 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 PIP4P1Q86T03 277 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 FAM58AQ8N1B3 248 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 OR4A4PQ8NGN8 299 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 OR11L1Q8NGX0 322 aa12.71□□□□□ -0.37
NUP54-217ENST00000514987 NKX6-2Q9C056 277 aaPredicted RBP12.71□□□□□ -0.37
NUP54-217ENST00000514987 MS4A7Q9GZW8 240 aaPredicted RBP12.71□□□□□ -0.37
NUP54-217ENST00000514987 UBE2J1Q9Y385 318 aaPredicted RBP12.71□□□□□ -0.37
NUP54-217ENST00000514987 CNOT4O95628 575 aaKnown RBP12.7□□□□□ -0.38
NUP54-217ENST00000514987 IGHG3P01860 377 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 PVALBP20472 110 aaPredicted RBP12.7□□□□□ -0.38
NUP54-217ENST00000514987 GNRHRP30968 328 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 MDH2P40926 338 aaKnown RBP12.7□□□□□ -0.38
NUP54-217ENST00000514987 UBE2NP61088 152 aaKnown RBP12.7□□□□□ -0.38
NUP54-217ENST00000514987 MST1LQ2TV78 715 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 MOB1BQ7L9L4 216 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 ZNF695Q8IW36 515 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 CMTM1Q8IZ96 169 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 SUMF2Q8NBJ7 301 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 OR4D5Q8NGN0 318 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 IL22RA2Q969J5 263 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 TSNAXQ99598 290 aaKnown RBP12.7□□□□□ -0.38
NUP54-217ENST00000514987 OR51I2Q9H344 312 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 FAM212BQ9NTI7 297 aaPredicted RBP12.7□□□□□ -0.38
NUP54-217ENST00000514987 TREM2Q9NZC2 230 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 CRIM1Q9NZV1 1036 aa12.7□□□□□ -0.38
NUP54-217ENST00000514987 POLDIP2Q9Y2S7 368 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms