RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 HTR5AP47898 357 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 RAG2P55895 527 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 UBE2NP61088 152 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 ATPAF1Q5TC12 328 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 HACD4Q5VWC8 232 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 NSUN5P2Q63ZY6 315 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 SLC18B1Q6NT16 456 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 DOLPP1Q86YN1 238 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 SKA3Q8IX90 412 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 TMEM123Q8N131 208 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 OR4D6Q8NGJ1 314 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 ABHD6Q9BV23 337 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 TNFSF18Q9UNG2 199 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 CHD3Q12873 2000 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 A0A0U1RQK1 487 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 UBE2CO00762 179 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 PLPP2O43688 288 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 DIRAS3O95661 229 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 NANOS3P60323 173 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 VAMP2P63027 116 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 COTL1Q14019 142 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 RNPS1Q15287 305 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 C1orf185Q5T7R7 199 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 CST9LP1Q5W188 147 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 ZNF774Q6NX45 483 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 KISS1RQ969F8 398 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 FAM71F1Q96KD3 344 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 PGLYRP3Q96LB9 341 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 BCO1Q9HAY6 547 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 GPR35Q9HC97 309 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 MMP26Q9NRE1 261 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 OR5AC2Q9NZP5 309 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 USF3Q68DE3 2245 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 TGIF2-C20orf24A0A0A6YYL0 155 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 TEX13DA0A0J9YY54 714 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 LDLRAD4O15165 306 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 HCKP08631 526 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 ZNF32P17041 273 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 MSR1P21757 451 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 HRH1P35367 487 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 OR3A2P47893 321 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 TFPI2P48307 235 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 ZP4Q12836 540 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 IKZF1Q13422 519 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 RAB32Q13637 225 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 C2orf76Q3KRA6 126 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 KHDC3LQ587J8 217 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 SPATA46Q5T0L3 261 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 EIF5AL1Q6IS14 154 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 FAM214BQ7L5A3 538 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 OR5D18Q8NGL1 313 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 LIPHQ8WWY8 451 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 HAVCR1Q96D42 359 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 GPX7Q96SL4 187 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 OCSTAMPQ9BR26 566 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 OR14J1Q9UGF5 321 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 ZNF281Q9Y2X9 895 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 GOLT1BQ9Y3E0 138 aa7.53□□□□□ -1.2
LIMCH1-209ENST00000509277 MED13LQ71F56 2210 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 A0A1W2PNV4 684 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 ETV2O00321 342 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 IGHG3P01860 377 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 LCATP04180 440 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 CD33P20138 364 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 SPCS3P61009 180 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 OR5I1Q13606 314 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 RAB11BQ15907 218 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 GUK1Q16774 197 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 KRTCAP3Q53RY4 240 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 LINC01590Q5TEZ4 76 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 TMEM182Q6ZP80 229 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 FAM57BQ71RH2 274 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 TRAPPC6BQ86SZ2 158 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 C15orf54Q8N8G6 183 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 SLC30A7Q8NEW0 376 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 FGFBP3Q8TAT2 258 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 TOMM40LQ969M1 308 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 FAM3DQ96BQ1 224 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 SLAMF6Q96DU3 332 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 PRORYQ9H606 182 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 OPA3Q9H6K4 179 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 MSL2Q9HCI7 577 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 RAB22AQ9UL26 194 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 MAP1AP78559 2803 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 IGLV1-36A0A0B4J1U3 117 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 TMEM269A0A1B0GVZ9 245 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 IL5P05113 134 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 SLC2A5P22732 501 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 FAM27E3Q08E93 113 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 LY6G6FQ5SQ64 297 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 UQCC3Q6UW78 93 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 SLC16A9Q7RTY1 509 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 REC114Q7Z4M0 266 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 OR56B1Q8NGI3 324 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 OR5M8Q8NGP6 311 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 FAM57AQ8TBR7 257 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 RRNAD1Q96FB5 475 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 PIK3IP1Q96FE7 263 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 GPER1Q99527 375 aa7.52□□□□□ -1.21
LIMCH1-209ENST00000509277 TMPRSS13Q9BYE2 586 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms