RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, human

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRM-206	ENST00000490101	YLPM1	P49750	1951 aa	Known RBP	15.2	■□□□□ 0.02
SRM-206	ENST00000490101	GABARAP	H6UMI1	98 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	15.2	■□□□□ 0.02
SRM-206	ENST00000490101	MFNG	O00587	321 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	PDCD6	O75340	191 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	CA11	O75493	328 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	KNG1	P01042	644 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	FUT3	P21217	361 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	PDLIM4	P50479	330 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	DCTN2	Q13561	401 aa	Known RBP	15.2	■□□□□ 0.02
SRM-206	ENST00000490101	SMIM21	Q3B7S5	101 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	SMIM4	Q8WVI0	70 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	ARHGAP5-AS1	Q96IT6	56 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	NEDD4L	Q96PU5	975 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	PIMREG	Q9BSJ6	248 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	PECR	Q9BY49	303 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	WDR13	Q9H1Z4	485 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	SPACA1	Q9HBV2	294 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	RCC2	Q9P258	522 aa	Known RBP	15.2	■□□□□ 0.02
SRM-206	ENST00000490101	NPTN	Q9Y639	398 aa		15.2	■□□□□ 0.02
SRM-206	ENST00000490101	LRRC30	A6NM36	301 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	C3orf80	F5H4A9	247 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	SULT1C2	O00338	296 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	PHF1	O43189	567 aa	Predicted RBP	15.19	■□□□□ 0.02
SRM-206	ENST00000490101	UPK1B	O75841	260 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	OR7C1	O76099	320 aa	Predicted RBP	15.19	■□□□□ 0.02
SRM-206	ENST00000490101	HPX	P02790	462 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	GLA	P06280	429 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	IRF2	P14316	349 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	EGR1	P18146	543 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	PRSS3	P35030	304 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	SNU13	P55769	128 aa	Known RBP	15.19	■□□□□ 0.02
SRM-206	ENST00000490101	BAK1	Q16611	211 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	PNLIPRP3	Q17RR3	467 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101		Q6P435	159 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	NEU4	Q8WWR8	484 aa	Predicted RBP	15.19	■□□□□ 0.02
SRM-206	ENST00000490101	TMEM158	Q8WZ71	300 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	ST8SIA4	Q92187	359 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	SHARPIN	Q9H0F6	387 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	CHODL	Q9H9P2	273 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	SCPEP1	Q9HB40	452 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	ZNF581	Q9P0T4	197 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	KCNK7	Q9Y2U2	307 aa		15.19	■□□□□ 0.02
SRM-206	ENST00000490101	DYSF	O75923	2080 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	IGHV1-69-2	A0A0G2JMI3	117 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	SERPINE3	A8MV23	424 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	SH2D1B	O14796	132 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	PTHLH	P12272	177 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	IL7	P13232	177 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	GNB3	P16520	340 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	DUSP1	P28562	367 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	GMFB	P60983	142 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	DGCR2	P98153	550 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	IKZF1	Q13422	519 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	HACD4	Q5VWC8	232 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	IL17REL	Q6ZVW7	336 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	C1orf87	Q8N0U7	546 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	OR8H2	Q8N162	312 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	OR52I2	Q8NH67	350 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	FCAMR	Q8WWV6	532 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	SEH1L	Q96EE3	360 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	ZMAT3	Q9HA38	289 aa	Known RBP	15.18	■□□□□ 0.02
SRM-206	ENST00000490101	PLEKHJ1	Q9NW61	149 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	GLS2	Q9UI32	602 aa		15.18	■□□□□ 0.02
SRM-206	ENST00000490101	MALRD1	Q5VYJ5	2156 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	TMEM235	A6NFC5	223 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	TMEM178B	H3BS89	294 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	DEGS1	O15121	323 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	CYB5R3	P00387	301 aa	Predicted RBP	15.17	■□□□□ 0.02
SRM-206	ENST00000490101	GZMK	P49863	264 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	MRPS11	P82912	194 aa	Known RBP	15.17	■□□□□ 0.02
SRM-206	ENST00000490101	PDCD1	Q15116	288 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	C16orf87	Q6PH81	154 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	C6orf201	Q7Z4U5	140 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	RTN4RL2	Q86UN3	420 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	BOLL	Q8N9W6	283 aa	Known RBP	15.17	■□□□□ 0.02
SRM-206	ENST00000490101	GPX8	Q8TED1	209 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	GCDH	Q92947	438 aa	Predicted RBP	15.17	■□□□□ 0.02
SRM-206	ENST00000490101	YIPF5	Q969M3	257 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	THAP7	Q9BT49	309 aa	Predicted RBP	15.17	■□□□□ 0.02
SRM-206	ENST00000490101	TMEM106B	Q9NUM4	274 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	LPAR3	Q9UBY5	353 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	ELF5	Q9UKW6	265 aa	Predicted RBP	15.17	■□□□□ 0.02
SRM-206	ENST00000490101	RBMX2	Q9Y388	322 aa	Known RBP	15.17	■□□□□ 0.02
SRM-206	ENST00000490101	WIPI2	Q9Y4P8	454 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	CACNG2	Q9Y698	323 aa		15.17	■□□□□ 0.02
SRM-206	ENST00000490101	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	15.16	■□□□□ 0.02	3e-7	■■■□□ 17.2
SRM-206	ENST00000490101	MEIOC	A2RUB1	952 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	VWC2L	B2RUY7	222 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	NDUFS8	O00217	210 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	HAND1	O96004	215 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	PSG2	P11465	335 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	LMO1	P25800	156 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	CD80	P33681	288 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	HOXA4	Q00056	320 aa	Predicted RBP	15.16	■□□□□ 0.02
SRM-206	ENST00000490101	IFITM3	Q01628	133 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	NKAPL	Q5M9Q1	402 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	ATAD3C	Q5T2N8	411 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	TEX36	Q5VZQ5	186 aa		15.16	■□□□□ 0.02
SRM-206	ENST00000490101	OLFML2A	Q68BL7	652 aa		15.16	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 287.1 ms