RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 INPP5EQ9NRR6 644 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 MYRFQ9Y2G1 1151 aa13.29□□□□□ -0.28
CCDC28B-204ENST00000469003 ODAMA1E959 279 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 TMEM212A6NML5 194 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 ADARB2-AS1A8MUL3 147 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 SLC33A1O00400 549 aaPredicted RBP13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 XPNPEP2O43895 674 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 MPZL2O60487 215 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 FADS2O95864 444 aaKnown RBP13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 IGLV1-47P01700 117 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 HCKP08631 526 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 GDNFP39905 211 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 ZP1P60852 638 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 SCN1BQ07699 218 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 MRPL28Q13084 256 aaKnown RBP13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 KISS1Q15726 138 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 KRBOX4Q5JUW0 171 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 SERPINA12Q8IW75 414 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 PARP16Q8N5Y8 322 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 OR4F17Q8NGA8 305 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 OR5D14Q8NGL3 314 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 RHOXF1Q8NHV9 184 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 COQ2Q96H96 371 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 Q96MT0 163 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 OR4F4Q96R69 305 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 OCSTAMPQ9BR26 566 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 ZNF649Q9BS31 505 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 C9orf16Q9BUW7 83 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 MMP28Q9H239 520 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 ERVK13-1Q9NX77 482 aa13.28□□□□□ -0.28
CCDC28B-204ENST00000469003 LEUTXA8MZ59 168 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 DEGS1O15121 323 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 SULT1B1O43704 296 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 ZFPL1O95159 310 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 CCDC159P0C7I6 412 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 TMEM225BP0DP42 221 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 BRS3P32247 399 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 PTGFRP43088 359 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 MTNR1BP49286 362 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 ARHGDIBP52566 201 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 RAB40BQ12829 278 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 CDK5R1Q15078 307 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 TMEM95Q3KNT9 176 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 C10orf67Q8IYJ2 551 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 OR4D6Q8NGJ1 314 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 OR5AK2Q8NH90 309 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 CREB3L1Q96BA8 519 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 R3HDM4Q96D70 268 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 AKR1E2Q96JD6 320 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 LIN7BQ9HAP6 207 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 ZNF286AQ9HBT8 521 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 AMBNQ9NP70 447 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 DHDHQ9UQ10 334 aa13.27□□□□□ -0.29
CCDC28B-204ENST00000469003 A0A087X0M5 115 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 A0A1B0GX30 115 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 FAM172BPA6NC97 362 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 ZNF729A6NN14 1252 aaPredicted RBP13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 E9PI62 339 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 CEACAM3P40198 252 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 GBX2P52951 348 aaPredicted RBP13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 ATXN7L3Q14CW9 347 aaPredicted RBP13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 HLA-DRB5Q30154 266 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 ZNF691Q5VV52 312 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 ELP2Q6IA86 826 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 PXT1Q8NFP0 134 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 HAVCR2Q8TDQ0 301 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 TSEN15Q8WW01 171 aaKnown RBP13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 STMN2Q93045 179 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 PDCD1LG2Q9BQ51 273 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 PPIL3Q9H2H8 161 aaKnown RBP13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 MRPS18AQ9NVS2 196 aaKnown RBP13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 ING3Q9NXR8 418 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 OR6C3Q9NZP0 311 aa13.26□□□□□ -0.29
CCDC28B-204ENST00000469003 LOC100130705A0A1B0GUX0 176 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 BUB1B-PAK6H3BSN5 160 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 TOR1AO14656 332 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 CD24P25063 80 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 PRRX1P54821 245 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 CD83Q01151 205 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 C17orf58Q2M2W7 97 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 TPTE2P1Q5T6R2 138 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 CCDC121Q6ZUS5 278 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 REC114Q7Z4M0 266 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 OR5AU1Q8NGC0 362 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 OR51T1Q8NGJ9 327 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 OR52I1Q8NGK6 324 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 CAPSLQ8WWF8 208 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 CPNE2Q96FN4 548 aaPredicted RBP13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 SLC29A1Q99808 456 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 SLC25A33Q9BSK2 321 aa13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 RPL36Q9Y3U8 105 aaKnown RBP13.25□□□□□ -0.29
CCDC28B-204ENST00000469003 KBTBD11-OT1A0A1B0GTJ5 212 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 OOSP1A8MZH6 123 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 H0YJX3 145 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 LY6LH3BQJ8 138 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 OR2F2O95006 317 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 RAB3AP20336 220 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 KLHL22Q53GT1 634 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 FBLN7Q53RD9 439 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms