RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 OR4X2Q8NGF9 303 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 OR52N4Q8NGI2 321 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 SGCDQ92629 289 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 RNFT2Q96EX2 444 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 ADAT3Q96EY9 351 aaPredicted RBP5.69□□□□□ -1.5
VPS41-208ENST00000448833 BARHL1Q9BZE3 327 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 GPR61Q9BZJ8 451 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 CHST6Q9GZX3 395 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 COMMD4Q9H0A8 199 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 NECAP2Q9NVZ3 263 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 RBFOX1Q9NWB1 397 aaKnown RBP5.69□□□□□ -1.5
VPS41-208ENST00000448833 FAM53CQ9NYF3 392 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 ZMAT5Q9UDW3 170 aaKnown RBP5.69□□□□□ -1.5
VPS41-208ENST00000448833 EXOGQ9Y2C4 368 aaKnown RBP5.69□□□□□ -1.5
VPS41-208ENST00000448833 GSTK1Q9Y2Q3 226 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 ZNF281Q9Y2X9 895 aa5.69□□□□□ -1.5
VPS41-208ENST00000448833 AMMECR1Q9Y4X0 333 aaPredicted RBP5.69□□□□□ -1.5
VPS41-208ENST00000448833 A0A087X0M5 115 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 IGKV1-9A0A0C4DH69 117 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 A0A1B0GX30 115 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 ODAMA1E959 279 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 G3V4G9 280 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 H3BSH0 61 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 BUB1B-PAK6H3BSN5 160 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 J3QRE1 110 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 PIN1P1O15428 100 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 OR2F2O95006 317 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 APOL3O95236 402 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 OR2H2O95918 312 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 IGLV1-47P01700 117 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 CD2P06729 351 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 HCKP08631 526 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 TMEM225BP0DP42 221 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 PF4V1P10720 104 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 CD28P10747 220 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 GZMHP20718 246 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 CDK2P24941 298 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 PAX6P26367 422 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 DUSP1P28562 367 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 SLC6A1P30531 599 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 POLR2IP36954 125 aaKnown RBP5.68□□□□□ -1.5
VPS41-208ENST00000448833 KIR3DL2P43630 455 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 OR3A1P47881 315 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 MTNR1BP49286 362 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 ALDH3A2P51648 485 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 GBX2P52951 348 aaPredicted RBP5.68□□□□□ -1.5
VPS41-208ENST00000448833 LOXL3P58215 753 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 BLCAPP62952 87 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 CD83Q01151 205 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 SCN1BQ07699 218 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 RAB40BQ12829 278 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 ALKBH1Q13686 389 aaKnown RBP5.68□□□□□ -1.5
VPS41-208ENST00000448833 GALEQ14376 348 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 KISS1Q15726 138 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 KLHL22Q53GT1 634 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 KRBOX4Q5JUW0 171 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 ELP2Q6IA86 826 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 THNSL2Q86YJ6 484 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 PARP16Q8N5Y8 322 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 WFDC9Q8NEX5 89 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 OR10A7Q8NGE5 316 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 OR4P4Q8NGL7 312 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 OR9G1Q8NH87 305 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 OR5AK2Q8NH90 309 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 RBM14Q96PK6 669 aaKnown RBP5.68□□□□□ -1.5
VPS41-208ENST00000448833 CITED2Q99967 270 aaPredicted RBP5.68□□□□□ -1.5
VPS41-208ENST00000448833 JAM3Q9BX67 310 aa5.68□□□□□ -1.5
VPS41-208ENST00000448833 PAK1IP1Q9NWT1 392 aaPredicted RBP5.68□□□□□ -1.5
VPS41-208ENST00000448833 RPL36Q9Y3U8 105 aaKnown RBP5.68□□□□□ -1.5
VPS41-208ENST00000448833 TSSC4Q9Y5U2 329 aaPredicted RBP5.68□□□□□ -1.5
VPS41-208ENST00000448833 KBTBD11-OT1A0A1B0GTJ5 212 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 TCRBV4S1A1TA0A5B7 111 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 IRGMA1A4Y4 181 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 SAC3D1A6NKF1 404 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 OR4C45A6NMZ5 311 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 SIRPB1O00241 398 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 SULT1B1O43704 296 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 PF4P02776 101 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 LPLP06858 475 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 RAB3AP20336 220 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 RAB7AP51149 207 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 SLC35A2P78381 396 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 PAX5Q02548 391 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 AESQ08117 197 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 MED21Q13503 144 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 DCTN2Q13561 401 aaKnown RBP5.67□□□□□ -1.5
VPS41-208ENST00000448833 HABP2Q14520 560 aaPredicted RBP5.67□□□□□ -1.5
VPS41-208ENST00000448833 CCDC58Q4VC31 144 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 TPRX1Q8N7U7 411 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 PXT1Q8NFP0 134 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 OR51D1Q8NGF3 324 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 OR51T1Q8NGJ9 327 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 OR13C9Q8NGT0 318 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 WIPF2Q8TF74 440 aaPredicted RBP5.67□□□□□ -1.5
VPS41-208ENST00000448833 DPF1Q92782 380 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 RPEQ96AT9 228 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 PELI1Q96FA3 418 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 RCC1LQ96I51 464 aaKnown RBP5.67□□□□□ -1.5
VPS41-208ENST00000448833 C4orf36Q96KX1 117 aa5.67□□□□□ -1.5
VPS41-208ENST00000448833 OR5M11Q96RB7 305 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms